Prupe.1G236700_v2.0.a1

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000622
Physical Location & Seq
Reverse (-)
25068902 .. 25070224
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G236700.1

Sequence Viewer

Length: 1323 bp
ATGAAGGTTGAAGTAATCTCCAAAGAGATTATCAAACCATCTTCTCCAACCCCTGACCATCTTCTCCACTACCAATTCTCCTTTCTTGATCAAATAGCTCCCCAAGTCTACAACCCTTTGCTCCTCTTTTATGAACACAATGCCAAGACACAACCCAACAGCACTGAAATATCCCACAACCTAAAGAACTCATTATGCGAGGTCTTAAACCTTTTCTACCCTCTAGCCGGGCGCATCAAGAACAACCAGTTCATACATTGCAATGACGAGGGCATCCCTTTCGTCGAAGCTCGAGTACTGGATTGCACACTTTCTGATGTTCTCAGCAACCCTATACCTGGTGAGCTTAACAAGTTCATGCCCTTTGAACTTGATGATATTACCAATTCATTGCCCCTAGGGGTCCAACTCAACATATTTCAATGTGGAGGCTTTGCAATTGGTCAATGCGTTTCTCACAAGATTGCTGATGGGTCGTCGTATTTCATGTTTAGCAAAATTTGGGCAGCCATTGCTCGCGGAGACCAAGCCAACATAAACCCTCCGGAGTTTGTCTCATCCACACTCTTCCCACCAAAGGAGTTTAATATTGGATTTGATGGTAGCGTTGGCATCACAAAGGATAGAGTAACAAAGCGGTTTGTGTTTGATGCCTCTCAAATAGAGAACCTCCGAGAAAGATATGAACAAAGTATGCACAATATCAAGAAACGCCCAACACGTGTGGAAACCTTATCCACTTTCTTATGGAGTCGGTTTGTTGCGGCTACAAAGGATAGTACCTTGAATAAGTTGTACAGGGTGGTACATGCTGTGAACTTGCGTCCGAGGTTTGATCCACCATTGCCTCAAAGTTTTTTTGGGAATCTTTTTCGTTTGGCCATTACAGCTCCACTGCAAATTCCAAGTAGTGGTGGTAGCGATGAAGAATGTGGTCATGGCGTGGTGATCCCAGTGGTACGAGAAGCAATAGACAATATAGACAATGAGTACATAAAGAAATTACAAAAGCAAGGTGATGAGCACTTAGGTGTGATGAAAAAACGAGCTGATAGTTTTAAGAGAGGAGAGATGGCTACATCACTTTACTTTAGTAGCTATTGTAGATTTCCTCTTTATGACAATGATTTTGGTTGGGGGAGGCCTACATGGGTCGGCTCACCGGCACTCACCTACAAGAACGTTGTGCTTTTCATGGACACAAAAGAGGGTGGTGGAATAGAGGCATATGTTAGTTTGGAGGAGGAAGTCATGGCTAAGTTTGAATGTGATAGCGAGTTGCTCTCCTATGTTGCTCCGGGTGCTCCTATGCTAAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

441

Amino Acids

49.63

Weight (kDa)

6.1

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 911
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 519
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 3 cut(s) 519, 637, 764
AclI AACGTT 1 cut(s) 1182
AclWI GGATC 2 cut(s) 830, 943
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 2 cut(s) 498, 900
AcvI CACGTG 1 cut(s) 722
AfaI GTAC 6 cut(s) 297, 781, 797, 807, 960, 992
AfiI CCNNNNNNNGG 4 cut(s) 227, 338, 577, 911
AflIII ACRYGT 2 cut(s) 719, 721
AgsI TTSAA 5 cut(s) 11, 368, 422, 787, 1265
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 1029
AluBI AGCT 6 cut(s) 98, 290, 346, 890, 1049, 1098
AluI AGCT 6 cut(s) 98, 290, 346, 890, 1049, 1098
Alw21I GWGCWC 2 cut(s) 1026, 1306
Alw26I GTCTC 2 cut(s) 516, 559
AlwI GGATC 2 cut(s) 830, 943
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 2 cut(s) 879, 1142
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 498, 900
ArsI GACNNNNNNTTYG 2 cut(s) 1112, 1144
AspA2I CCTAGG 1 cut(s) 397
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 2 cut(s) 229, 1299
AsuHPI GGTGA 5 cut(s) 353, 958, 1028, 1152, 1162
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 403
AvrII CCTAGG 1 cut(s) 397
BalI TGGCCA 1 cut(s) 881
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BbrPI CACGTG 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 1026, 1306
BbvI GCAGC 1 cut(s) 518
BccI CCATC 5 cut(s) 46, 66, 464, 593, 1066
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 2 cut(s) 229, 1299
BcoDI GTCTC 2 cut(s) 516, 559
BfaI CTAG 2 cut(s) 224, 398
BisI GCNGC 2 cut(s) 507, 765
BlnI CCTAGG 1 cut(s) 397
BlsI GCNGC 2 cut(s) 508, 766
BmcAI AGTACT 1 cut(s) 297
Bme1390I CCNGG 3 cut(s) 229, 339, 1299
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 3 cut(s) 229, 339, 1299
BmrI ACTGGG 1 cut(s) 947
BmsI GCATC 4 cut(s) 243, 282, 621, 640
BmuI ACTGGG 1 cut(s) 947
BplI GAGNNNNNCTC 4 cut(s) 539, 571, 1268, 1300
Bpu10I CCTNAGC 1 cut(s) 1313
BpuMI CCSGG 2 cut(s) 229, 1299
BsaAI YACGTR 1 cut(s) 722
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 397, 827
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 338, 577, 911
Bse118I RCCGGY 1 cut(s) 1162
Bse1I ACTGG 3 cut(s) 247, 303, 953
Bse3DI GCAATG 5 cut(s) 256, 268, 389, 510, 842
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 397, 827
BseGI GGATG 2 cut(s) 273, 557
BseLI CCNNNNNNNGG 4 cut(s) 227, 338, 577, 911
BseMI GCAATG 5 cut(s) 256, 268, 389, 510, 842
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 3 cut(s) 247, 303, 953
BseRI GAGGAG 3 cut(s) 113, 1080, 1256
BseXI GCAGC 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 2 cut(s) 881, 1144
BsiHKAI GWGCWC 2 cut(s) 1026, 1306
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 4 cut(s) 228, 545, 1163, 1298
BslI CCNNNNNNNGG 4 cut(s) 227, 338, 577, 911
BsmAI GTCTC 2 cut(s) 516, 559
BsnI GGCC 2 cut(s) 881, 1144
Bso31I GGTCTC 1 cut(s) 516
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 1026, 1306
Bsp13I TCCGGA 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 3 cut(s) 88, 835, 948
BspACI CCGC 3 cut(s) 519, 637, 764
BspANI GGCC 2 cut(s) 881, 1144
BspCNI CTCAG 1 cut(s) 336
BspEI TCCGGA 1 cut(s) 544
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 2 cut(s) 830, 943
BspTNI GGTCTC 1 cut(s) 516
BsrDI GCAATG 5 cut(s) 256, 268, 389, 510, 842
BsrFI RCCGGY 1 cut(s) 1162
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 3 cut(s) 247, 303, 953
BssAI RCCGGY 1 cut(s) 1162
BssECI CCNNGG 2 cut(s) 397, 827
BssMI GATC 3 cut(s) 88, 835, 948
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 795
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 4 cut(s) 323, 1027, 1257, 1313
BstF5I GGATG 2 cut(s) 273, 557
BstFNI CGCG 1 cut(s) 519
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 91, 838, 951
BstMAI GTCTC 2 cut(s) 516, 559
BstMBI GATC 3 cut(s) 88, 835, 948
BstMWI GCNNNNNNNGC 3 cut(s) 512, 887, 1301
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 812
BstSCI CCNGG 3 cut(s) 227, 337, 1297
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 518
BsuRI GGCC 2 cut(s) 881, 1144
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 2 cut(s) 273, 557
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 3 cut(s) 162, 893, 960
Cac8I GCNNGC 1 cut(s) 517
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 1162
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 812
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 6 cut(s) 296, 780, 796, 806, 959, 991
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 7 cut(s) 358, 487, 809, 938, 1149, 1195, 1252
CviQI GTAC 6 cut(s) 296, 780, 796, 806, 959, 991
DdeI CTNAG 4 cut(s) 323, 1027, 1257, 1313
DpnI GATC 3 cut(s) 90, 837, 950
DpnII GATC 3 cut(s) 88, 835, 948
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 1144
Eco31I GGTCTC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 403
Eco72I CACGTG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 7 cut(s) 361, 490, 812, 941, 1152, 1198, 1255
FatI CATG 7 cut(s) 357, 486, 808, 937, 1148, 1194, 1251
FauNDI CATATG 1 cut(s) 1228
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 507, 765
FokI GGATG 2 cut(s) 260, 544
Fsp4HI GCNGC 2 cut(s) 507, 765
FspBI CTAG 2 cut(s) 224, 398
GlaI GCGC 1 cut(s) 233
GluI GCNGC 2 cut(s) 507, 765
HaeIII GGCC 2 cut(s) 881, 1144
HapII CCGG 4 cut(s) 228, 545, 1163, 1298
HgaI GACGC 1 cut(s) 812
HhaI GCGC 1 cut(s) 234
Hin1II CATG 7 cut(s) 361, 490, 812, 941, 1152, 1198, 1255
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 2 cut(s) 751, 865
HpaII CCGG 4 cut(s) 228, 545, 1163, 1298
HphI GGTGA 5 cut(s) 353, 958, 1028, 1152, 1162
Hpy166II GTNNAC 2 cut(s) 109, 817
Hpy188I TCNGA 3 cut(s) 316, 674, 828
Hpy188III TCNNGA 4 cut(s) 86, 238, 545, 706
Hpy8I GTNNAC 2 cut(s) 109, 817
Hpy99I CGWCG 2 cut(s) 287, 481
HpyCH4IV ACGT 2 cut(s) 721, 1182
HpyCH4V TGCA 5 cut(s) 261, 306, 437, 697, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 887, 1301
HpyF3I CTNAG 4 cut(s) 323, 1027, 1257, 1313
HpySE526I ACGT 2 cut(s) 721, 1182
Hsp92II CATG 7 cut(s) 361, 490, 812, 941, 1152, 1198, 1255
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 88, 835, 948
LmnI GCTCC 5 cut(s) 103, 126, 895, 1300, 1309
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 4 cut(s) 243, 282, 621, 640
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 2 cut(s) 224, 398
MaeII ACGT 2 cut(s) 721, 1182
MaeIII GTNAC 1 cut(s) 628
MalI GATC 3 cut(s) 90, 837, 950
MboI GATC 3 cut(s) 88, 835, 948
MboII GAAGA 4 cut(s) 33, 53, 559, 938
MfeI CAATTG 1 cut(s) 438
MhlI GDGCHC 2 cut(s) 1026, 1306
MlsI TGGCCA 1 cut(s) 881
MluCI AATT 6 cut(s) 74, 385, 438, 498, 900, 1001
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 2 cut(s) 71, 430
Mox20I TGGCCA 1 cut(s) 881
MroI TCCGGA 1 cut(s) 544
MscI TGGCCA 1 cut(s) 881
MseI TTAA 4 cut(s) 206, 348, 585, 1059
MslI CAYNNNNRTG 2 cut(s) 261, 1029
Msp20I TGGCCA 1 cut(s) 881
MspI CCGG 4 cut(s) 228, 545, 1163, 1298
MspR9I CCNGG 3 cut(s) 229, 339, 1299
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 3 cut(s) 512, 887, 1301
NciI CCSGG 2 cut(s) 229, 1299
NdeI CATATG 1 cut(s) 1228
NdeII GATC 3 cut(s) 88, 835, 948
NlaIII CATG 7 cut(s) 361, 490, 812, 941, 1152, 1198, 1255
NlaIV GGNNCC 1 cut(s) 404
NspI RCATGY 1 cut(s) 812
OliI CACNNNNGTG 1 cut(s) 1029
PaeR7I CTCGAG 1 cut(s) 291
PceI AGGCCT 1 cut(s) 1144
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PfeI GAWTC 1 cut(s) 865
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 2 cut(s) 508, 766
PleI GAGTC 1 cut(s) 759
PmaCI CACGTG 1 cut(s) 722
PmlI CACGTG 1 cut(s) 722
PpsI GAGTC 1 cut(s) 759
Ppu21I YACGTR 1 cut(s) 722
Psp1406I AACGTT 1 cut(s) 1182
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 722
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 291
RsaI GTAC 6 cut(s) 297, 781, 797, 807, 960, 992
RsaNI GTAC 6 cut(s) 296, 780, 796, 806, 959, 991
RseI CAYNNNNRTG 2 cut(s) 261, 1029
SaqAI TTAA 4 cut(s) 206, 348, 585, 1059
SatI GCNGC 2 cut(s) 507, 765
Sau3AI GATC 3 cut(s) 88, 835, 948
Sau96I GGNCC 1 cut(s) 403
ScaI AGTACT 1 cut(s) 297
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 3 cut(s) 229, 339, 1299
SduI GDGCHC 2 cut(s) 1026, 1306
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 4 cut(s) 243, 282, 621, 640
Sfr274I CTCGAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 261, 1029
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 6 cut(s) 74, 385, 438, 498, 900, 1001
SseBI AGGCCT 1 cut(s) 1144
SsiI CCGC 3 cut(s) 519, 637, 764
SspI AATATT 1 cut(s) 589
SspMI CTAG 2 cut(s) 224, 398
StuI AGGCCT 1 cut(s) 1144
StyD4I CCNGG 3 cut(s) 227, 337, 1297
StyI CCWWGG 1 cut(s) 397
TaiI ACGT 2 cut(s) 724, 1185
TaqI TCGA 2 cut(s) 285, 292
TasI AATT 6 cut(s) 74, 385, 438, 498, 900, 1001
TatI WGTACW 3 cut(s) 295, 795, 990
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 1 cut(s) 865
Tru1I TTAA 4 cut(s) 206, 348, 585, 1059
Tru9I TTAA 4 cut(s) 206, 348, 585, 1059
TscAI CASTG 3 cut(s) 169, 900, 960
TseI GCWGC 1 cut(s) 506
TspRI CASTG 3 cut(s) 169, 900, 960
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 2 cut(s) 498, 900
XceI RCATGY 1 cut(s) 812
XhoI CTCGAG 1 cut(s) 291
XmaJI CCTAGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 224, 398
ZrmI AGTACT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.