pycom13g09930

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
6623350 .. 6624682
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09930.2

Sequence Viewer

Length: 1239 bp
ATGAAGGTTGAAGTTGTAGTAATCTCCAAGGAGATTATCAGACCATCTTCTCCAACTCCTGGCCACCTTCGCCATTACCAATTCTCCTTTCTTGATCAAATGGCTCCCCATGTCTACAACCCTTTGCTCCTCTTCTATGAATACAATGCCAAGATGCATCCCAACATCACTGAAATATCCAACCACCTTAAGAACTCCTTATCCGAGGCCCTATCGCTATTCTACCCACTAGCCGGTCGAATCAAAGACAACCGCTTCATACATTGCAATGACGAGGGCATCCCCTACGTCGAAGCTCGAGTGCTGAATTGCACTCTCTCTGATGTTCTCAGCAACCCCAACCCTGGTGAACTTAACAAGTTCATGCCATTTGAACTTGATGATATTACCAATCCATTACCCTTTGGGGTCCAGCTCAACATATTTCAGTGTGGAGGGTTTGCTATTGGCCAATGCATTTCTCACAAGATTGCTGATGGGTTGTCCTATTTCACGTTCAGCAAAATTTGGGCATCCATCGCCCGTGGGGAACAAGCCAACATAGACCCTCCACAATTTGTGTCAGCCACACTCTTCCCACCAAAGGAGTTCAATACTGGATTCGATGGAGGAATTGGAATCACAAAAGATAGAGTGACAAAGAGGTTCGTGTTCAATGCCTCTAAAATAGAGACCCTCAAAGCAAAATATGAAAAAGATATGAAAAGCCTCCAACTAAAACACCCCACGCTGAACCTACGTCCGCGGTTTAGTCCACCATTGCCTCAACATTCTTTTGGGAATCTTTTTCGTGTTGCCATGACATCACCACTGCGAATCAGTAATGGCGGGGAGGAAGAATGTGATGGGGTGGTGATTGGGGAGGTGCGAGAAGCGATAAGCAAGATTGACAATGAGTACGTGAAGCAATTACAAAGGCAGGGTGATGAGCACTTGGGTTTGATGAAGAAAACTGTTGATAGTTTCAAGAGAGGAGACATGGTTGCGGTACTTAGCTTCAGTAGCTATTGTAGGTTTCCTCTCTATGAGAATGACTTTGGTTGGGGTAAACCTGCGTGGGTGGGATCACCGGCACTGACCTATAAGAACCTAGTGCTTTTCATGGACACCAAGGAGGGTGATGGAATAGAGGCATATGTTAGCTTGGAGGAGAGAGTCATGGCCAAATTCGAATGTGATAGCGAGTTGCTCTCTTATGTTTCTCCAGCCGGTCGGGTCCTGCCGAGCTGTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

46.31

Weight (kDa)

6.39

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1060
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 745
AciI CCGC 5 cut(s) 253, 743, 745, 828, 986
AclWI GGATC 1 cut(s) 1072
AcoI YGGCCR 3 cut(s) 61, 448, 1161
AcsI RAATTY 2 cut(s) 504, 1166
AcuI CTGAAG 1 cut(s) 982
AfaI GTAC 2 cut(s) 899, 990
AfiI CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 1229
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 5 cut(s) 11, 374, 592, 655, 967
AjnI CCWGG 2 cut(s) 58, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 6 cut(s) 296, 415, 996, 1005, 1143, 1227
AluI AGCT 6 cut(s) 296, 415, 996, 1005, 1143, 1227
Alw21I GWGCWC 1 cut(s) 933
Alw26I GTCTC 2 cut(s) 665, 969
AlwI GGATC 1 cut(s) 1072
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 4 cut(s) 61, 207, 448, 1161
ApoI RAATTY 2 cut(s) 504, 1166
AspS9I GGNCC 3 cut(s) 208, 409, 1216
AsuHPI GGTGA 6 cut(s) 359, 798, 865, 935, 1059, 1130
AsuII TTCGAA 1 cut(s) 1170
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 2 cut(s) 409, 1216
BalI TGGCCA 3 cut(s) 63, 450, 1163
Bbv12I GWGCWC 1 cut(s) 933
BccI CCATC 6 cut(s) 52, 470, 524, 599, 839, 1115
BciT130I CCWGG 2 cut(s) 60, 345
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 665, 969
BfaI CTAG 2 cut(s) 230, 1091
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 1060
Bme1390I CCNGG 2 cut(s) 60, 345
Bme18I GGWCC 2 cut(s) 409, 1216
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 208, 409, 1216
BmiI GGNNCC 3 cut(s) 105, 410, 1217
BmrFI CCNGG 2 cut(s) 60, 345
BmsI GCATC 4 cut(s) 144, 166, 288, 521
BplI GAGNNNNNCTC 2 cut(s) 1175, 1207
BpmI CTGGAG 1 cut(s) 1188
Bpu14I TTCGAA 1 cut(s) 1170
BsaAI YACGTR 1 cut(s) 901
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 6 cut(s) 27, 204, 343, 523, 743, 1110
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 966, 996
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 1229
Bse118I RCCGGY 3 cut(s) 233, 1069, 1208
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 3 cut(s) 262, 274, 758
BseBI CCWGG 2 cut(s) 60, 345
BseDI CCNNGG 6 cut(s) 27, 204, 343, 523, 743, 1110
BseGI GGATG 3 cut(s) 157, 279, 512
BseLI CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 1229
BseMI GCAATG 3 cut(s) 262, 274, 758
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 3 cut(s) 119, 987, 1163
Bsh1236I CGCG 1 cut(s) 745
Bsh1285I CGRYCG 2 cut(s) 238, 1213
BshFI GGCC 4 cut(s) 63, 209, 450, 1163
BsiEI CGRYCG 2 cut(s) 238, 1213
BsiHKAI GWGCWC 1 cut(s) 933
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 3 cut(s) 234, 1070, 1209
BslI CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 1229
BsmAI GTCTC 2 cut(s) 665, 969
BsnI GGCC 4 cut(s) 63, 209, 450, 1163
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 297
Bsp119I TTCGAA 1 cut(s) 1170
Bsp1286I GDGCHC 1 cut(s) 933
Bsp143I GATC 2 cut(s) 94, 1064
BspACI CCGC 5 cut(s) 253, 743, 745, 828, 986
BspANI GGCC 4 cut(s) 63, 209, 450, 1163
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 105, 410, 1217
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 1 cut(s) 1072
BspT104I TTCGAA 1 cut(s) 1170
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 3 cut(s) 262, 274, 758
BsrFI RCCGGY 3 cut(s) 233, 1069, 1208
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 3 cut(s) 233, 1069, 1208
BssECI CCNNGG 6 cut(s) 27, 204, 343, 523, 743, 1110
BssMI GATC 2 cut(s) 94, 1064
BssT1I CCWWGG 2 cut(s) 27, 1110
Bst2UI CCWGG 2 cut(s) 60, 345
Bst4CI ACNGT 1 cut(s) 955
Bst6I CTCTTC 2 cut(s) 137, 578
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 901
BstBI TTCGAA 1 cut(s) 1170
BstDEI CTNAG 2 cut(s) 329, 992
BstDSI CCRYGG 2 cut(s) 523, 743
BstF5I GGATG 3 cut(s) 157, 279, 512
BstFNI CGCG 1 cut(s) 745
BstKTI GATC 2 cut(s) 97, 1067
BstMAI GTCTC 2 cut(s) 665, 969
BstMBI GATC 2 cut(s) 94, 1064
BstMCI CGRYCG 2 cut(s) 238, 1213
BstMWI GCNNNNNNNGC 3 cut(s) 69, 518, 1002
BstNI CCWGG 2 cut(s) 60, 345
BstSCI CCNGG 2 cut(s) 58, 343
BstUI CGCG 1 cut(s) 745
BsuRI GGCC 4 cut(s) 63, 209, 450, 1163
BtgI CCRYGG 2 cut(s) 523, 743
BtgZI GCGATG 1 cut(s) 502
BtsCI GGATG 3 cut(s) 157, 279, 512
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 4 cut(s) 168, 434, 809, 1073
BveI ACCTGC 1 cut(s) 1060
Cfr10I RCCGGY 3 cut(s) 233, 1069, 1208
Cfr13I GGNCC 3 cut(s) 208, 409, 1216
Cfr42I CCGCGG 1 cut(s) 746
Csp6I GTAC 2 cut(s) 898, 989
CviAII CATG 6 cut(s) 110, 364, 799, 979, 1102, 1159
CviQI GTAC 2 cut(s) 898, 989
DdeI CTNAG 2 cut(s) 329, 992
DpnI GATC 2 cut(s) 96, 1066
DpnII GATC 2 cut(s) 94, 1064
EaeI YGGCCR 3 cut(s) 61, 448, 1161
Eam1104I CTCTTC 2 cut(s) 137, 578
EarI CTCTTC 2 cut(s) 137, 578
Eco130I CCWWGG 2 cut(s) 27, 1110
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 409, 1216
Eco57I CTGAAG 1 cut(s) 982
Eco88I CYCGRG 1 cut(s) 297
EcoO109I RGGNCCY 2 cut(s) 208, 1216
EcoRII CCWGG 2 cut(s) 58, 343
EcoT14I CCWWGG 2 cut(s) 27, 1110
EcoT22I ATGCAT 2 cut(s) 159, 458
ErhI CCWWGG 2 cut(s) 27, 1110
FaeI CATG 6 cut(s) 113, 367, 802, 982, 1105, 1162
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 6 cut(s) 109, 363, 798, 978, 1101, 1158
FauI CCCGC 1 cut(s) 821
FauNDI CATATG 1 cut(s) 1135
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 114
FokI GGATG 3 cut(s) 144, 266, 499
FspBI CTAG 2 cut(s) 230, 1091
GsuI CTGGAG 1 cut(s) 1188
HaeIII GGCC 4 cut(s) 63, 209, 450, 1163
HapII CCGG 3 cut(s) 234, 1070, 1209
Hin1II CATG 6 cut(s) 113, 367, 802, 982, 1105, 1162
HinfI GANTC 6 cut(s) 240, 600, 618, 781, 816, 1155
HpaII CCGG 3 cut(s) 234, 1070, 1209
HphI GGTGA 6 cut(s) 359, 798, 865, 935, 1059, 1130
Hpy166II GTNNAC 4 cut(s) 115, 350, 755, 1049
Hpy188I TCNGA 3 cut(s) 41, 205, 322
Hpy188III TCNNGA 2 cut(s) 92, 967
Hpy8I GTNNAC 4 cut(s) 115, 350, 755, 1049
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 955
HpyCH4IV ACGT 4 cut(s) 288, 494, 739, 900
HpyCH4V TGCA 4 cut(s) 157, 267, 312, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 518, 1002
HpyF3I CTNAG 2 cut(s) 329, 992
HpySE526I ACGT 4 cut(s) 288, 494, 739, 900
Hsp92II CATG 6 cut(s) 113, 367, 802, 982, 1105, 1162
Ksp22I TGATCA 1 cut(s) 94
KspI CCGCGG 1 cut(s) 746
Kzo9I GATC 2 cut(s) 94, 1064
LmnI GCTCC 2 cut(s) 109, 132
LweI GCATC 4 cut(s) 144, 166, 288, 521
MaeI CTAG 2 cut(s) 230, 1091
MaeII ACGT 4 cut(s) 288, 494, 739, 900
MaeIII GTNAC 1 cut(s) 634
MalI GATC 2 cut(s) 96, 1066
MboI GATC 2 cut(s) 94, 1064
MboII GAAGA 5 cut(s) 39, 124, 565, 848, 958
MhlI GDGCHC 1 cut(s) 933
MlsI TGGCCA 3 cut(s) 63, 450, 1163
MluCI AATT 8 cut(s) 80, 307, 504, 554, 612, 908, 1166, 1234
MluNI TGGCCA 3 cut(s) 63, 450, 1163
MlyI GAGTC 1 cut(s) 1164
MmeI TCCRAC 3 cut(s) 77, 204, 736
Mox20I TGGCCA 3 cut(s) 63, 450, 1163
Mph1103I ATGCAT 2 cut(s) 159, 458
MscI TGGCCA 3 cut(s) 63, 450, 1163
MseI TTAA 3 cut(s) 189, 354, 1237
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 3 cut(s) 63, 450, 1163
MspA1I CMGCKG 1 cut(s) 745
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 3 cut(s) 234, 1070, 1209
MspR9I CCNGG 2 cut(s) 60, 345
MvaI CCWGG 2 cut(s) 60, 345
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 3 cut(s) 69, 518, 1002
NdeI CATATG 1 cut(s) 1135
NdeII GATC 2 cut(s) 94, 1064
NlaIII CATG 6 cut(s) 113, 367, 802, 982, 1105, 1162
NlaIV GGNNCC 3 cut(s) 105, 410, 1217
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 2 cut(s) 159, 458
NspV TTCGAA 1 cut(s) 1170
PaeR7I CTCGAG 1 cut(s) 297
PfeI GAWTC 5 cut(s) 240, 600, 618, 781, 816
PflMI CCANNNNNTGG 1 cut(s) 59
PleI GAGTC 1 cut(s) 1163
PpsI GAGTC 1 cut(s) 1163
Ppu21I YACGTR 1 cut(s) 901
PpuMI RGGWCCY 1 cut(s) 1216
Psp5II RGGWCCY 1 cut(s) 1216
Psp6I CCWGG 2 cut(s) 58, 343
PspGI CCWGG 2 cut(s) 58, 343
PspN4I GGNNCC 3 cut(s) 105, 410, 1217
PspPI GGNCC 3 cut(s) 208, 409, 1216
PspPPI RGGWCCY 1 cut(s) 1216
PspXI VCTCGAGB 1 cut(s) 297
RsaI GTAC 2 cut(s) 899, 990
RsaNI GTAC 2 cut(s) 898, 989
RseI CAYNNNNRTG 1 cut(s) 267
SacII CCGCGG 1 cut(s) 746
SaqAI TTAA 3 cut(s) 189, 354, 1237
Sau3AI GATC 2 cut(s) 94, 1064
Sau96I GGNCC 3 cut(s) 208, 409, 1216
SchI GAGTC 1 cut(s) 1164
ScrFI CCNGG 2 cut(s) 60, 345
SduI GDGCHC 1 cut(s) 933
SfaNI GCATC 4 cut(s) 144, 166, 288, 521
Sfr274I CTCGAG 1 cut(s) 297
Sfr303I CCGCGG 1 cut(s) 746
SfuI TTCGAA 1 cut(s) 1170
SgrBI CCGCGG 1 cut(s) 746
SinI GGWCC 2 cut(s) 409, 1216
SlaI CTCGAG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 188, 297
SmoI CTYRAG 2 cut(s) 188, 297
Sse9I AATT 8 cut(s) 80, 307, 504, 554, 612, 908, 1166, 1234
SsiI CCGC 5 cut(s) 253, 743, 745, 828, 986
SspMI CTAG 2 cut(s) 230, 1091
StyD4I CCNGG 2 cut(s) 58, 343
StyI CCWWGG 2 cut(s) 27, 1110
TaaI ACNGT 1 cut(s) 955
TaiI ACGT 4 cut(s) 291, 497, 742, 903
TaqI TCGA 5 cut(s) 238, 291, 298, 603, 1170
TasI AATT 8 cut(s) 80, 307, 504, 554, 612, 908, 1166, 1234
TfiI GAWTC 5 cut(s) 240, 600, 618, 781, 816
Tru1I TTAA 3 cut(s) 189, 354, 1237
Tru9I TTAA 3 cut(s) 189, 354, 1237
TscAI CASTG 4 cut(s) 175, 434, 816, 1080
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 8 cut(s) 17, 153, 247, 352, 705, 716, 959, 1090
TspRI CASTG 4 cut(s) 175, 434, 816, 1080
Van91I CCANNNNNTGG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 409, 1216
XapI RAATTY 2 cut(s) 504, 1166
XhoI CTCGAG 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 230, 1091
Zsp2I ATGCAT 2 cut(s) 159, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.