pycom13g09460

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000622
Physical Location & Seq
Forward (+)
6337687 .. 6338127
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09460.1

Sequence Viewer

Length: 441 bp
ATGACATCACCGCTACGAATCAGTAATGGCGGGGAGGAAGAATGTGATGGGATGGTGATTGGGGAGGTGCGAGAAGCGATAAGCAAGATTGACAATGAGTACGTGAAGCAATTACAAAGGCAGGGTGATGAGCACTTGGGTTTGATGAAGAAAGCTGCTGATAGTTTCAAGAGAGGAGACATGGTTGCGGTACTTAGCTTCAGTAGTTATTGTAGGTTTCCTCTCTATGAGAATGACTTTGGTTGGGGTAAACCTGCGTGGGTGGGATCACCGGCACTGACCTATAAGAACCTAGTGCTTTTCATGGACACCAAGGAGGGTGATGGAATAGAGGCATATGTTAGCTTGGAGGAGAGAGTCATGGCCAAATTCGAATGTGATACCGAGTTGCTCTCTTATGTTTCTCCAGCCGGTCGGGTCCTGCTGAGCTGTGGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

147

Amino Acids

16.27

Weight (kDa)

4.86

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 19 - 130 4.7e-17 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AciI CCGC 3 cut(s) 11, 30, 188
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 2 cut(s) 101, 192
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 4 cut(s) 155, 198, 345, 429
AluI AGCT 4 cut(s) 155, 198, 345, 429
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 274
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 67, 137, 261, 332
AsuII TTCGAA 1 cut(s) 372
AvaII GGWCC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 142
BccI CCATC 3 cut(s) 41, 46, 317
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 1 cut(s) 390
Bpu1102I GCTNAGC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse118I RCCGGY 2 cut(s) 271, 410
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 2 cut(s) 189, 365
BseXI GCAGC 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 2 cut(s) 272, 411
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 266
Bsp1720I GCTNAGC 1 cut(s) 425
BspACI CCGC 3 cut(s) 11, 30, 188
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 419
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 372
BsrFI RCCGGY 2 cut(s) 271, 410
BssAI RCCGGY 2 cut(s) 271, 410
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 194, 425
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 266
BstMCI CGRYCG 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 262
Cfr10I RCCGGY 2 cut(s) 271, 410
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 100, 191
CviAII CATG 3 cut(s) 181, 304, 361
CviJI RGCY 6 cut(s) 155, 198, 345, 365, 410, 429
CviKI_1 RGCY 6 cut(s) 155, 198, 345, 365, 410, 429
CviQI GTAC 2 cut(s) 100, 191
DdeI CTNAG 2 cut(s) 194, 425
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 184, 307, 364
FaiI YATR 8 cut(s) 182, 228, 285, 305, 337, 339, 362, 399
FatI CATG 3 cut(s) 180, 303, 360
FauI CCCGC 1 cut(s) 23
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 365
HapII CCGG 2 cut(s) 272, 411
Hin1II CATG 3 cut(s) 184, 307, 364
HinfI GANTC 2 cut(s) 18, 357
HpaII CCGG 2 cut(s) 272, 411
HphI GGTGA 4 cut(s) 67, 137, 261, 332
Hpy166II GTNNAC 2 cut(s) 251, 434
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 251, 434
HpyCH4IV ACGT 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 194, 425
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 3 cut(s) 184, 307, 364
Kzo9I GATC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 107, 267, 285, 420, 424, 434
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 102
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 2 cut(s) 50, 160
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 110, 368
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 7 cut(s) 28, 58, 167, 231, 310, 325, 343
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 439
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 272, 411
NdeI CATATG 1 cut(s) 337
NdeII GATC 1 cut(s) 266
NlaIII CATG 3 cut(s) 184, 307, 364
NlaIV GGNNCC 1 cut(s) 419
NspV TTCGAA 1 cut(s) 372
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 418
PspPPI RGGWCCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 101, 192
RsaNI GTAC 2 cut(s) 100, 191
SaqAI TTAA 1 cut(s) 439
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 1 cut(s) 366
SduI GDGCHC 1 cut(s) 135
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 1 cut(s) 418
Sse9I AATT 2 cut(s) 110, 368
SsiI CCGC 3 cut(s) 11, 30, 188
SspMI CTAG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 312
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 372
TasI AATT 2 cut(s) 110, 368
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 161, 292
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 368
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.