Rmu_sc0011237.1_g000018

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011237.1
OG0000622
Physical Location & Seq
Forward (+)
44342 .. 44821
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011237.1_g000018.1.cds

Sequence Viewer

Length: 480 bp
atggttcatgctatgaacttgcggccaaggttcgacccaccactgccacaccattcctttgggaacctttacagagtcgccatgacagctccgttacaaataagttccagaaaactataccatggtacacgagaagtgataagcaagatcgacaataagtacgtgagaaaactacagaaaggtgatgagcatttgagttccatcaagacctatgctaaaagttttgctaaaggcgagcatgttacaattagctccagtagttattgcaggtttcatttgtatgataacgattttggttgggggaggcctacgtggttggggtcgccagcactgacgtttaagaaccgggtgaccttcatggatatgaaagagggtggtgggattgaggcttatattagcttggaggaggaagtcatgactaagttagagagcaatgtggagcttttagcttatgtgtctccaagtgcggtgctgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

159

Amino Acids

18.1

Weight (kDa)

9.16

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AciI CCGC 2 cut(s) 22, 467
AcoI YGGCCR 1 cut(s) 23
AfaI GTAC 2 cut(s) 127, 161
AluBI AGCT 5 cut(s) 89, 252, 399, 442, 449
AluI AGCT 5 cut(s) 89, 252, 399, 442, 449
Alw26I GTCTC 1 cut(s) 462
AoxI GGCC 2 cut(s) 23, 305
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 194, 361
BauI CACGAG 1 cut(s) 129
BccI CCATC 1 cut(s) 209
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 1 cut(s) 478
BfmI CTRYAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 347
BsaAI YACGTR 2 cut(s) 163, 312
BsaJI CCNNGG 2 cut(s) 26, 121
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 26, 121
BseMI GCAATG 1 cut(s) 439
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 419
BshFI GGCC 2 cut(s) 25, 307
BsiSI CCGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 462
BsnI GGCC 2 cut(s) 25, 307
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 2 cut(s) 22, 467
BspANI GGCC 2 cut(s) 25, 307
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 26, 121
BssMI GATC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 26, 121
Bst2BI CACGAG 1 cut(s) 129
BstBAI YACGTR 2 cut(s) 163, 312
BstC8I GCNNGC 2 cut(s) 236, 327
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 121
BstEII GGTNACC 1 cut(s) 349
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 25, 307
BtgI CCRYGG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 329
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 236, 327
CciI TCATGA 1 cut(s) 414
Csp6I GTAC 2 cut(s) 126, 160
CviAII CATG 6 cut(s) 8, 82, 122, 239, 358, 415
CviJI RGCY 8 cut(s) 25, 89, 252, 307, 389, 399, 442, 449
CviKI_1 RGCY 8 cut(s) 25, 89, 252, 307, 389, 399, 442, 449
CviQI GTAC 2 cut(s) 126, 160
DdeI CTNAG 1 cut(s) 420
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 26, 121
Eco147I AGGCCT 1 cut(s) 307
Eco91I GGTNACC 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 26, 121
ErhI CCWWGG 2 cut(s) 26, 121
FaeI CATG 6 cut(s) 11, 85, 125, 242, 361, 418
FatI CATG 6 cut(s) 7, 81, 121, 238, 357, 414
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 478
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 2 cut(s) 25, 307
HapII CCGG 1 cut(s) 346
Hin1II CATG 6 cut(s) 11, 85, 125, 242, 361, 418
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 346
HphI GGTGA 2 cut(s) 194, 361
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 108, 205, 415
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 364
HpyCH4IV ACGT 3 cut(s) 162, 311, 335
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 3 cut(s) 162, 311, 335
Hsp92II CATG 6 cut(s) 11, 85, 125, 242, 361, 418
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 3 cut(s) 94, 257, 439
LpnPI CCDG 5 cut(s) 121, 253, 268, 339, 359
MaeI CTAG 1 cut(s) 478
MaeII ACGT 3 cut(s) 162, 311, 335
MaeIII GTNAC 3 cut(s) 93, 241, 349
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 5 cut(s) 297, 364, 379, 397, 400
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 279, 362
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 121
NdeII GATC 1 cut(s) 147
NlaIII CATG 6 cut(s) 11, 85, 125, 242, 361, 418
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 1 cut(s) 242
PagI TCATGA 1 cut(s) 414
PceI AGGCCT 1 cut(s) 307
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 2 cut(s) 163, 312
PspEI GGTNACC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 65
RsaI GTAC 2 cut(s) 127, 161
RsaNI GTAC 2 cut(s) 126, 160
RseI CAYNNNNRTG 2 cut(s) 279, 362
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 279, 362
Sse9I AATT 1 cut(s) 246
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 2 cut(s) 22, 467
SspMI CTAG 1 cut(s) 478
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 2 cut(s) 26, 121
TaiI ACGT 3 cut(s) 165, 314, 338
TaqI TCGA 2 cut(s) 33, 150
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 48, 336
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 29, 263, 346, 380
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 48, 336
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.