Rmu_sc0031677.1_g000001

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031677.1
OG0000622
Physical Location & Seq
Reverse (-)
1 .. 465
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031677.1_g000001.1.cds

Sequence Viewer

Length: 421 bp
ctgaagaactccttagccaaagtcttaacccttttctacccgctagccggacgactccaaggcaaccagtacgtggattgcaacgacaatggaataccctaccttgaagctaaagtgaactgcaaactctcagatgttctcgacaatccaatacccggagaactcaacaagctcatgccatttgagctggacgatgtggcaaacaaatatgcccttggcgtccagctcaacatctttgaatgtggtggttttgctattgctcaatgcctttctcacaagctcgcagatgggttatcatacttcacgttcagcaaaatttgggccgccactgcccgtggtgaacccaaaatagcacatccacagttcatttccgccacactatttcctcccaagaatttaagtggatatgatgcgcgcactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

140

Amino Acids

15.37

Weight (kDa)

6.9

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AccII CGCG 1 cut(s) 415
AciI CCGC 3 cut(s) 41, 324, 372
AcsI RAATTY 2 cut(s) 315, 394
AcuI CTGAAG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 3 cut(s) 47, 73, 155
AgsI TTSAA 2 cut(s) 107, 239
AluBI AGCT 5 cut(s) 110, 172, 187, 226, 280
AluI AGCT 5 cut(s) 110, 172, 187, 226, 280
AoxI GGCC 1 cut(s) 321
ApoI RAATTY 2 cut(s) 315, 394
AspLEI GCGC 2 cut(s) 415, 417
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 350
AsuNHI GCTAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 281
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 400
BmtI GCTAGC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 58, 214, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 73, 155
Bse1I ACTGG 1 cut(s) 67
BseDI CCNNGG 3 cut(s) 58, 214, 334
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 3 cut(s) 47, 73, 155
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 67
BsePI GCGCGC 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 415
BshFI GGCC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 48, 156
BslI CCNNNNNNNGG 3 cut(s) 47, 73, 155
BsnI GGCC 1 cut(s) 323
BspACI CCGC 3 cut(s) 41, 324, 372
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 415
BspOI GCTAGC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 58, 214, 334
BssHII GCGCGC 1 cut(s) 413
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 2 cut(s) 58, 214
Bst4CI ACNGT 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 3 cut(s) 45, 282, 415
BstDEI CTNAG 2 cut(s) 13, 130
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 2 cut(s) 415, 417
BstMWI GCNNNNNNNGC 2 cut(s) 184, 329
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 1 cut(s) 415
BsuRI GGCC 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 327, 417
Cac8I GCNNGC 3 cut(s) 45, 282, 415
CfoI GCGC 2 cut(s) 415, 417
Cfr13I GGNCC 1 cut(s) 321
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 175
CviJI RGCY 8 cut(s) 17, 47, 110, 172, 187, 226, 280, 323
CviKI_1 RGCY 8 cut(s) 17, 47, 110, 172, 187, 226, 280, 323
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 13, 130
EciI GGCGGA 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 58, 214
Eco57I CTGAAG 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 58, 214
ErhI CCWWGG 2 cut(s) 58, 214
FaeI CATG 1 cut(s) 178
FaiI YATR 4 cut(s) 176, 210, 298, 408
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 44
GlaI GCGC 2 cut(s) 414, 416
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 48, 156
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 415, 417
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 2 cut(s) 413, 415
HinP1I GCGC 2 cut(s) 413, 415
HinfI GANTC 1 cut(s) 54
HpaII CCGG 2 cut(s) 48, 156
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 118, 341
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 118, 341
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 2 cut(s) 72, 305
HpyCH4V TGCA 2 cut(s) 81, 123
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 329
HpyF3I CTNAG 2 cut(s) 13, 130
HpySE526I ACGT 2 cut(s) 72, 305
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 2 cut(s) 413, 415
LpnPI CCDG 5 cut(s) 61, 80, 169, 173, 236
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 72, 305
MboII GAAGA 1 cut(s) 16
MluCI AATT 2 cut(s) 315, 394
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 1 cut(s) 396
MseI TTAA 2 cut(s) 26, 398
MspI CCGG 2 cut(s) 48, 156
MspR9I CCNGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 184, 329
NciI CCSGG 1 cut(s) 156
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 178
PauI GCGCGC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 73
PspPI GGNCC 1 cut(s) 321
PteI GCGCGC 1 cut(s) 413
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 26, 398
SatI GCNGC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 156
SetI ASST 8 cut(s) 75, 105, 112, 174, 189, 228, 282, 308
SfaNI GCATC 1 cut(s) 400
Sse9I AATT 2 cut(s) 315, 394
SsiI CCGC 3 cut(s) 41, 324, 372
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 2 cut(s) 58, 214
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 2 cut(s) 75, 308
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 315, 394
TauI GCSGC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 26, 398
Tru9I TTAA 2 cut(s) 26, 398
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 73
XapI RAATTY 2 cut(s) 315, 394
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.