Rw0G019170

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00861
Physical Location & Seq
Reverse (-)
36937 .. 38211
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019170.1

Sequence Viewer

Length: 1275 bp
ATGAAGTTAGAAGCTGAAGTAATCTCCAAACAGATTATCACTCCTTCTTCTCCAACCCCTGACCATCTTCGCCATTACCAGTTCTCTTTTCTTGATCAAATATCTCCCCCGGTCTATAACCCTTTGCTCCTCTTTTATGAATTCAATGCGCAAACTCAACCCAACATCACTGAAATATCCAACCACCTGAAGACCTCCTTAGCCAAAGTCTTAACCCTTTTCTACCCACTAGCCGGACGACTCAATGGCAACCAACACGTGGATTGCAACGACAATGGTATACCTTACCTTGAAGCTCAAGTGAACTGCAAACTCTCAGATGTTCTCGACAATCCGATACCCGGAGAACTCAACAAGCTCATGCCATTTGAACTGGACGATGTGGCAAACAAATTTGCCCTTGGCATCCAGCTCAACATCTTTCAATGTGGTGGTTTTGCTATTGCACAGTGCCTTTCTCACAGGCTCGCAGATGGGTTATCATACTTCATGTTCAGCAAAACTTGGGCCGCCACTGCCCGTGGCGAACCCAACGTAGCACATCCGCAGTTCATTTCCGCCAAACTATTCCCTCCCAAGAATTTAAGTGGATTTGATGCGCGCACTGGTATCACAAGAAACAAAGTGACAAAACGCTTTGTGTTTAGTGCCCCTAACATAGAGGAGCTCAGAAAAGTTCAAGCACATAAGGCCTTAACACGCCCTTCACGTGTTGAGGCCTTATCTTCTTTCATCTTAAGCCGATTTATGGAGGCTACCAAAGATATTGGATCAGTTGACAAGTTGTACAGGGTGCTTCATGCTGTGAACTTGCGGCCAAGGATTGACCCACCACTGCCAAACCATTCCTTTGGGAACCTTTACCGAGTTGCCATCACAGATCCGTTACAAATAAGTACCAGGGAACCATATCATGGCATACGAGAAGCCATAAGCAAGATCGACAATGAGTACGTCAGAAAACTACAGAAAGGTGATGAGTATTTGAGTTCCATCAAGACCAATGCTAAAACTTTTGCTAAAGGCGAGCAGGTTATACTTAGCTTCAGTAGTTATTGCTGGTTTCCTCTGTATGATAATGATTTTGGTTGGGGGAGGCCTACGTGGGTGGGGTCGCCGGCACTGACGTTCAAGAACTTAGTGACCTTCATGGATACCAAAGAGGGTGGTGGAATTGAGGCTTATATTAGCTTGGAAGAGGAAGTCATGACTAAGTTTGAGAGCGATGTGGAGCTCTTAGCTTATGTGTCTCCAAGTGCAGTGCTGAACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

47.69

Weight (kDa)

7.14

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 412 1.2e-74 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 1021
AccB7I CCANNNNNTGG 2 cut(s) 259, 914
AccI GTMKAC 1 cut(s) 280
AccII CGCG 1 cut(s) 601
AciI CCGC 4 cut(s) 510, 545, 558, 814
AclWI GGATC 2 cut(s) 778, 875
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 3 cut(s) 140, 392, 580
AcuI CTGAAG 3 cut(s) 36, 209, 1030
AcvI CACGTG 2 cut(s) 259, 710
AfaI GTAC 3 cut(s) 788, 898, 953
AfiI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
AflII CTTAAG 1 cut(s) 736
AflIII ACRYGT 2 cut(s) 256, 709
AgsI TTSAA 6 cut(s) 145, 293, 371, 425, 680, 1132
AjnI CCWGG 1 cut(s) 899
AluBI AGCT 9 cut(s) 14, 296, 358, 412, 667, 1044, 1191, 1234, 1241
AluI AGCT 9 cut(s) 14, 296, 358, 412, 667, 1044, 1191, 1234, 1241
Alw21I GWGCWC 2 cut(s) 669, 1236
Alw26I GTCTC 1 cut(s) 1254
AlwI GGATC 2 cut(s) 778, 875
AoxI GGCC 5 cut(s) 507, 690, 717, 815, 1097
ApoI RAATTY 3 cut(s) 140, 392, 580
AspLEI GCGC 3 cut(s) 151, 601, 603
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 2 cut(s) 110, 342
AsuHPI GGTGA 1 cut(s) 986
BaeGI GKGCMC 1 cut(s) 652
BanII GRGCYC 2 cut(s) 669, 1236
BbrPI CACGTG 2 cut(s) 259, 710
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 669, 1236
BccI CCATC 4 cut(s) 72, 467, 881, 1001
BciT130I CCWGG 1 cut(s) 901
BciVI GTATCC 1 cut(s) 1147
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 110, 342
BcoDI GTCTC 1 cut(s) 1254
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 965
BfrI CTTAAG 1 cut(s) 736
BfuAI ACCTGC 1 cut(s) 1021
BfuI GTATCC 1 cut(s) 1147
BisI GCNGC 2 cut(s) 510, 815
BlsI GCNGC 2 cut(s) 511, 816
Bme1390I CCNGG 3 cut(s) 110, 342, 901
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 857, 906
BmrFI CCNGG 3 cut(s) 110, 342, 901
BmsI GCATC 2 cut(s) 414, 586
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 110, 342
BsaAI YACGTR 3 cut(s) 259, 710, 1104
BsaJI CCNNGG 5 cut(s) 108, 400, 520, 818, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
Bse118I RCCGGY 1 cut(s) 1117
Bse1I ACTGG 3 cut(s) 79, 378, 610
BseBI CCWGG 1 cut(s) 901
BseDI CCNNGG 5 cut(s) 108, 400, 520, 818, 900
BseGI GGATG 2 cut(s) 405, 541
BseLI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
BseMII CTCAG 2 cut(s) 330, 682
BseNI ACTGG 3 cut(s) 79, 378, 610
BsePI GCGCGC 1 cut(s) 599
BseRI GAGGAG 2 cut(s) 119, 677
BseSI GKGCMC 1 cut(s) 652
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 5 cut(s) 509, 692, 719, 817, 1099
BsiHKAI GWGCWC 2 cut(s) 669, 1236
BsiSI CCGG 4 cut(s) 110, 234, 342, 1118
BslI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
BsmAI GTCTC 1 cut(s) 1254
BsnI GGCC 5 cut(s) 509, 692, 719, 817, 1099
Bsp1286I GDGCHC 3 cut(s) 652, 669, 1236
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 4 cut(s) 94, 770, 880, 939
BspACI CCGC 4 cut(s) 510, 545, 558, 814
BspANI GGCC 5 cut(s) 509, 692, 719, 817, 1099
BspCNI CTCAG 2 cut(s) 329, 681
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 2 cut(s) 857, 906
BspMI ACCTGC 1 cut(s) 1021
BspPI GGATC 2 cut(s) 778, 875
BspTI CTTAAG 1 cut(s) 736
BsrFI RCCGGY 1 cut(s) 1117
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 3 cut(s) 79, 378, 610
BssAI RCCGGY 1 cut(s) 1117
BssECI CCNNGG 5 cut(s) 108, 400, 520, 818, 900
BssHII GCGCGC 1 cut(s) 599
BssMI GATC 4 cut(s) 94, 770, 880, 939
BssNAI GTATAC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 400, 818
Bst1107I GTATAC 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 1191
BstAFI CTTAAG 1 cut(s) 736
BstAUI TGTACA 1 cut(s) 786
BstBAI YACGTR 3 cut(s) 259, 710, 1104
BstC8I GCNNGC 4 cut(s) 468, 601, 1028, 1119
BstDEI CTNAG 7 cut(s) 199, 316, 668, 1040, 1138, 1212, 1237
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 2 cut(s) 405, 541
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 3 cut(s) 151, 601, 603
BstKTI GATC 4 cut(s) 97, 773, 883, 942
BstMAI GTCTC 1 cut(s) 1254
BstMBI GATC 4 cut(s) 94, 770, 880, 939
BstMWI GCNNNNNNNGC 2 cut(s) 515, 689
BstNI CCWGG 1 cut(s) 901
BstSCI CCNGG 3 cut(s) 108, 340, 899
BstSFI CTRYAG 1 cut(s) 965
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 601
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 880
BstXI CCANNNNNNTGG 1 cut(s) 851
BstYI RGATCY 1 cut(s) 880
BstZ17I GTATAC 1 cut(s) 281
BsuI GTATCC 1 cut(s) 1147
BsuRI GGCC 5 cut(s) 509, 692, 719, 817, 1099
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 1239
BtsCI GGATG 2 cut(s) 405, 541
BtsI GCAGTG 3 cut(s) 513, 833, 1266
BtsIMutI CAGTG 7 cut(s) 168, 455, 513, 603, 833, 1121, 1266
BveI ACCTGC 1 cut(s) 1021
Cac8I GCNNGC 4 cut(s) 468, 601, 1028, 1119
CciI TCATGA 1 cut(s) 1206
CfoI GCGC 3 cut(s) 151, 601, 603
Cfr10I RCCGGY 1 cut(s) 1117
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 3 cut(s) 787, 897, 952
CspCI CAANNNNNGTGG 2 cut(s) 1147, 1182
CviAII CATG 6 cut(s) 361, 490, 800, 914, 1150, 1207
CviQI GTAC 3 cut(s) 787, 897, 952
DdeI CTNAG 7 cut(s) 199, 316, 668, 1040, 1138, 1212, 1237
DpnI GATC 4 cut(s) 96, 772, 882, 941
DpnII GATC 4 cut(s) 94, 770, 880, 939
EaeI YGGCCR 1 cut(s) 815
Eam1104I CTCTTC 1 cut(s) 1191
EarI CTCTTC 1 cut(s) 1191
EciI GGCGGA 1 cut(s) 547
Ecl136II GAGCTC 2 cut(s) 667, 1234
Eco130I CCWWGG 2 cut(s) 400, 818
Eco147I AGGCCT 3 cut(s) 692, 719, 1099
Eco24I GRGCYC 2 cut(s) 669, 1236
Eco53kI GAGCTC 2 cut(s) 667, 1234
Eco57I CTGAAG 3 cut(s) 36, 209, 1030
Eco72I CACGTG 2 cut(s) 259, 710
EcoICRI GAGCTC 2 cut(s) 667, 1234
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 899
EcoT14I CCWWGG 2 cut(s) 400, 818
EcoT38I GRGCYC 2 cut(s) 669, 1236
ErhI CCWWGG 2 cut(s) 400, 818
FaeI CATG 6 cut(s) 364, 493, 803, 917, 1153, 1210
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 6 cut(s) 360, 489, 799, 913, 1149, 1206
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 510, 815
FokI GGATG 2 cut(s) 392, 528
FriOI GRGCYC 2 cut(s) 669, 1236
Fsp4HI GCNGC 2 cut(s) 510, 815
FspBI CTAG 1 cut(s) 230
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 3 cut(s) 150, 600, 602
GluI GCNGC 2 cut(s) 510, 815
HaeIII GGCC 5 cut(s) 509, 692, 719, 817, 1099
HapII CCGG 4 cut(s) 110, 234, 342, 1118
HhaI GCGC 3 cut(s) 151, 601, 603
Hin1II CATG 6 cut(s) 364, 493, 803, 917, 1153, 1210
Hin6I GCGC 3 cut(s) 149, 599, 601
HinP1I GCGC 3 cut(s) 149, 599, 601
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 1 cut(s) 240
HpaII CCGG 4 cut(s) 110, 234, 342, 1118
HphI GGTGA 1 cut(s) 986
Hpy166II GTNNAC 4 cut(s) 281, 304, 778, 808
Hpy188I TCNGA 4 cut(s) 319, 336, 671, 959
Hpy188III TCNNGA 5 cut(s) 92, 326, 997, 1132, 1207
Hpy8I GTNNAC 4 cut(s) 281, 304, 778, 808
HpyAV CCTTC 3 cut(s) 54, 714, 1156
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4IV ACGT 7 cut(s) 258, 534, 709, 954, 1103, 1127, 1269
HpyCH4V TGCA 4 cut(s) 267, 309, 446, 1259
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 689
HpyF3I CTNAG 7 cut(s) 199, 316, 668, 1040, 1138, 1212, 1237
HpySE526I ACGT 7 cut(s) 258, 534, 709, 954, 1103, 1127, 1269
Hsp92II CATG 6 cut(s) 364, 493, 803, 917, 1153, 1210
HspAI GCGC 3 cut(s) 149, 599, 601
KroI GCCGGC 1 cut(s) 1117
KroNI GCCGGC 1 cut(s) 1119
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 770, 880, 939
LmnI GCTCC 3 cut(s) 132, 664, 1231
LweI GCATC 2 cut(s) 414, 586
MaeI CTAG 1 cut(s) 230
MaeII ACGT 7 cut(s) 258, 534, 709, 954, 1103, 1127, 1269
MaeIII GTNAC 3 cut(s) 625, 885, 1141
MalI GATC 4 cut(s) 96, 772, 882, 941
MboI GATC 4 cut(s) 94, 770, 880, 939
MboII GAAGA 5 cut(s) 39, 59, 202, 717, 1208
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 3 cut(s) 652, 669, 1236
MluCI AATT 4 cut(s) 140, 392, 580, 1173
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 77, 204
MroNI GCCGGC 1 cut(s) 1117
MseI TTAA 4 cut(s) 212, 584, 695, 737
MspCI CTTAAG 1 cut(s) 736
MspI CCGG 4 cut(s) 110, 234, 342, 1118
MspR9I CCNGG 3 cut(s) 110, 342, 901
MvaI CCWGG 1 cut(s) 901
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 515, 689
NaeI GCCGGC 1 cut(s) 1119
NciI CCSGG 2 cut(s) 110, 342
NdeII GATC 4 cut(s) 94, 770, 880, 939
NgoMIV GCCGGC 1 cut(s) 1117
NlaIII CATG 6 cut(s) 364, 493, 803, 917, 1153, 1210
NlaIV GGNNCC 2 cut(s) 857, 906
NmuCI GTSAC 2 cut(s) 625, 1141
NsbI TGCGCA 1 cut(s) 150
PagI TCATGA 1 cut(s) 1206
PauI GCGCGC 1 cut(s) 599
PceI AGGCCT 3 cut(s) 692, 719, 1099
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PdiI GCCGGC 1 cut(s) 1119
PflMI CCANNNNNTGG 2 cut(s) 259, 914
PkrI GCNGC 2 cut(s) 511, 816
PleI GAGTC 1 cut(s) 234
PmaCI CACGTG 2 cut(s) 259, 710
PmlI CACGTG 2 cut(s) 259, 710
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 3 cut(s) 259, 710, 1104
Psp124BI GAGCTC 2 cut(s) 669, 1236
Psp6I CCWGG 1 cut(s) 899
PspCI CACGTG 2 cut(s) 259, 710
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 857, 906
PspPI GGNCC 1 cut(s) 507
PsuI RGATCY 1 cut(s) 880
PteI GCGCGC 1 cut(s) 599
RsaI GTAC 3 cut(s) 788, 898, 953
RsaNI GTAC 3 cut(s) 787, 897, 952
SacI GAGCTC 2 cut(s) 669, 1236
SaqAI TTAA 4 cut(s) 212, 584, 695, 737
SatI GCNGC 2 cut(s) 510, 815
Sau3AI GATC 4 cut(s) 94, 770, 880, 939
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 110, 342, 901
SduI GDGCHC 3 cut(s) 652, 669, 1236
SfaNI GCATC 2 cut(s) 414, 586
SfcI CTRYAG 1 cut(s) 965
SmlI CTYRAG 2 cut(s) 297, 736
SmoI CTYRAG 2 cut(s) 297, 736
Sse9I AATT 4 cut(s) 140, 392, 580, 1173
SseBI AGGCCT 3 cut(s) 692, 719, 1099
SsiI CCGC 4 cut(s) 510, 545, 558, 814
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 2 cut(s) 669, 1236
StuI AGGCCT 3 cut(s) 692, 719, 1099
StyD4I CCNGG 3 cut(s) 108, 340, 899
StyI CCWWGG 2 cut(s) 400, 818
TaaI ACNGT 1 cut(s) 450
TaiI ACGT 7 cut(s) 261, 537, 712, 957, 1106, 1130, 1272
TaqI TCGA 2 cut(s) 327, 942
TasI AATT 4 cut(s) 140, 392, 580, 1173
TatI WGTACW 1 cut(s) 786
TauI GCSGC 2 cut(s) 512, 817
Tru1I TTAA 4 cut(s) 212, 584, 695, 737
Tru9I TTAA 4 cut(s) 212, 584, 695, 737
TscAI CASTG 7 cut(s) 175, 455, 520, 610, 840, 1128, 1266
TseFI GTSAC 2 cut(s) 625, 1141
Tsp45I GTSAC 2 cut(s) 625, 1141
TspDTI ATGAA 7 cut(s) 17, 153, 478, 541, 721, 788, 1138
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 7 cut(s) 175, 455, 520, 610, 840, 1128, 1266
Van91I CCANNNNNTGG 2 cut(s) 259, 914
Vha464I CTTAAG 1 cut(s) 736
XapI RAATTY 3 cut(s) 140, 392, 580
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.