RchiOBHm_Chr3g0490301

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000622
Physical Location & Seq
Reverse (-)
36989221 .. 36990817
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45348

Sequence Viewer

Length: 816 bp
ATGAATATTGAAGTTGAATTGATACTTGAGGAGATTATCAAACCATCTTCTTCAACCCCTGATGATCTTCGCCATTACCAGCTTTCCTTCCTTGATCAGTTATCTCCTCCAGTCTATAACCTTTTGGTCCTCTTTTATGAATTCAATGACGAGACGATGCCTAGCGTTACTGAAATATCCAACCACCTTAAGAAGTCCTTAGCCGAGGTCTTAACCCTTTTCTACCCATTAGCGGGACGAATCACAGACAACAAGTATGTAGATTGCAATGATGAGGGCATTCCCTATGTTGAAGCTCATGTTAAGTGTGAACTTTCTGAAGTTCTCAACAATCCAGTCCCTGGTGAATTCAATGGATTATGTCATTTCATGTTCAGCAAAACTTGGGCTGCCACTGCCCTCGGAGATCAAGCCAAAATAGAGCCTCCGGAGTTTATTTCAGCAAAACTCTTCCCACCAAGGGATTTTACAGCCTATGATGCAGGCCTTGGCATCACAAGGAATAAAGTAGCAAAGAGGTTTGTGTTTAGTGCATCTATGATAGAGACTCTCAGAGCAAACTATCAGAACAGCGAAGGCCTAGAAAACCAGAAACGCCCATCATGTGTTGATGCTTTGTCGGCTTTCATATGGAGTCGATATGTGGCCAACACCAAGGATACAGGACCTGCTGAGAAGTTGTACATAGAGCTCCATTCTGTGAACCTGCGTCCAAGGTTTGACCCCTCGTTGCCGCACCATTCTTTTGGAAATCTTTATCGTGCTGCCATGACAGCTCCTTTTTTAAGTAGCGGGAAGAATGCTATGGCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

271

Amino Acids

30.56

Weight (kDa)

5.41

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 112 1.2e-26 Transferase family
Transferase PF02458 121 - 258 1.4e-11 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 676, 714
AccB7I CCANNNNNTGG 1 cut(s) 341
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 3 cut(s) 233, 734, 792
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 2 cut(s) 140, 347
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 4 cut(s) 232, 233, 341, 460
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 6 cut(s) 11, 17, 54, 145, 293, 352
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 82, 296, 691, 776
AluI AGCT 4 cut(s) 82, 296, 691, 776
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 2 cut(s) 146, 539
AlwNI CAGNNNCTG 2 cut(s) 341, 668
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 3 cut(s) 484, 577, 645
ApeKI GCWGC 2 cut(s) 389, 764
ApoI RAATTY 2 cut(s) 140, 347
AspS9I GGNCC 2 cut(s) 127, 665
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 2 cut(s) 127, 665
BalI TGGCCA 1 cut(s) 647
BanII GRGCYC 1 cut(s) 693
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 2 cut(s) 376, 751
BccI CCATC 2 cut(s) 52, 607
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 652
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 146, 539
BfaI CTAG 2 cut(s) 162, 581
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 2 cut(s) 676, 714
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 3 cut(s) 390, 734, 765
BlsI GCNGC 3 cut(s) 391, 735, 766
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 127, 665
BmgT120I GGNCC 2 cut(s) 127, 665
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 5 cut(s) 147, 469, 501, 542, 601
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 7 cut(s) 204, 340, 400, 458, 487, 654, 713
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 233, 341, 460
Bse1I ACTGG 2 cut(s) 110, 335
Bse3DI GCAATG 1 cut(s) 274
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 7 cut(s) 204, 340, 400, 458, 487, 654, 713
BseLI CCNNNNNNNGG 4 cut(s) 232, 233, 341, 460
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 565, 663
BseNI ACTGG 2 cut(s) 110, 335
BseRI GAGGAG 2 cut(s) 44, 96
BseXI GCAGC 2 cut(s) 376, 751
BshFI GGCC 3 cut(s) 486, 579, 647
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 249, 323
BslI CCNNNNNNNGG 4 cut(s) 232, 233, 341, 460
BsmAI GTCTC 2 cut(s) 146, 539
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 249, 323
BsmI GAATGC 2 cut(s) 279, 805
BsnI GGCC 3 cut(s) 486, 579, 647
Bsp1286I GDGCHC 1 cut(s) 693
Bsp13I TCCGGA 1 cut(s) 427
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 3 cut(s) 64, 94, 406
BspACI CCGC 3 cut(s) 233, 734, 792
BspANI GGCC 3 cut(s) 486, 579, 647
BspCNI CTCAG 2 cut(s) 564, 664
BspEI TCCGGA 1 cut(s) 427
BspMI ACCTGC 2 cut(s) 676, 714
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 274
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 2 cut(s) 110, 335
BssECI CCNNGG 7 cut(s) 204, 340, 400, 458, 487, 654, 713
BssMI GATC 3 cut(s) 64, 94, 406
BssT1I CCWWGG 4 cut(s) 458, 487, 654, 713
Bst2UI CCWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 455
BstAFI CTTAAG 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 3 cut(s) 199, 551, 672
BstKTI GATC 3 cut(s) 67, 97, 409
BstMAI GTCTC 2 cut(s) 146, 539
BstMBI GATC 3 cut(s) 64, 94, 406
BstMWI GCNNNNNNNGC 4 cut(s) 395, 479, 620, 773
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 376, 751
BstXI CCANNNNNNTGG 1 cut(s) 746
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 3 cut(s) 486, 579, 647
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 2 cut(s) 676, 714
Cac8I GCNNGC 1 cut(s) 484
CaiI CAGNNNCTG 2 cut(s) 341, 668
Cfr13I GGNCC 2 cut(s) 127, 665
CseI GACGC 1 cut(s) 698
Csp6I GTAC 1 cut(s) 682
CviAII CATG 4 cut(s) 299, 370, 603, 769
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 3 cut(s) 199, 551, 672
DpnI GATC 3 cut(s) 66, 96, 408
DpnII GATC 3 cut(s) 64, 94, 406
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 4 cut(s) 458, 487, 654, 713
Eco147I AGGCCT 2 cut(s) 486, 579
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 127, 665
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 665
EcoRI GAATTC 2 cut(s) 140, 347
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 4 cut(s) 458, 487, 654, 713
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 4 cut(s) 458, 487, 654, 713
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 4 cut(s) 302, 373, 606, 772
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 249, 323
FatI CATG 4 cut(s) 298, 369, 602, 768
FauI CCCGC 2 cut(s) 226, 785
FauNDI CATATG 1 cut(s) 629
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 390, 734, 765
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 3 cut(s) 390, 734, 765
FspBI CTAG 2 cut(s) 162, 581
GluI GCNGC 3 cut(s) 390, 734, 765
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 3 cut(s) 486, 579, 647
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 698
Hin1II CATG 4 cut(s) 302, 373, 606, 772
HinfI GANTC 3 cut(s) 240, 547, 634
HpaII CCGG 1 cut(s) 428
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 311, 703
Hpy188I TCNGA 4 cut(s) 319, 404, 554, 567
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 2 cut(s) 311, 703
HpyAV CCTTC 2 cut(s) 97, 569
HpyCH4V TGCA 3 cut(s) 267, 482, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 479, 620, 773
HpyF3I CTNAG 3 cut(s) 199, 551, 672
Hsp92II CATG 4 cut(s) 302, 373, 606, 772
Kpn2I TCCGGA 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 64, 94, 406
LmnI GCTCC 2 cut(s) 696, 781
Lsp1109I GCAGC 2 cut(s) 376, 751
LweI GCATC 5 cut(s) 147, 469, 501, 542, 601
MaeI CTAG 2 cut(s) 162, 581
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 66, 96, 408
MboI GATC 3 cut(s) 64, 94, 406
MboII GAAGA 5 cut(s) 39, 42, 59, 442, 808
MhlI GDGCHC 1 cut(s) 693
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 3 cut(s) 17, 140, 347
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 2 cut(s) 541, 643
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 9 cut(s) 22, 117, 140, 199, 268, 410, 435, 510, 736
Mox20I TGGCCA 1 cut(s) 647
MroI TCCGGA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 647
MseI TTAA 4 cut(s) 189, 212, 303, 785
Msp20I TGGCCA 1 cut(s) 647
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 2 cut(s) 279, 805
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 395, 479, 620, 773
NdeI CATATG 1 cut(s) 629
NdeII GATC 3 cut(s) 64, 94, 406
NlaIII CATG 4 cut(s) 302, 373, 606, 772
NmeAIII GCCGAG 1 cut(s) 229
PceI AGGCCT 2 cut(s) 486, 579
PctI GAATGC 2 cut(s) 279, 805
PfeI GAWTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 3 cut(s) 391, 735, 766
PleI GAGTC 2 cut(s) 541, 642
PpsI GAGTC 2 cut(s) 541, 642
PpuMI RGGWCCY 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 2 cut(s) 127, 665
PspPPI RGGWCCY 1 cut(s) 665
PstNI CAGNNNCTG 2 cut(s) 341, 668
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 4 cut(s) 189, 212, 303, 785
SatI GCNGC 3 cut(s) 390, 734, 765
Sau3AI GATC 3 cut(s) 64, 94, 406
Sau96I GGNCC 2 cut(s) 127, 665
SchI GAGTC 2 cut(s) 541, 643
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 5 cut(s) 147, 469, 501, 542, 601
SinI GGWCC 2 cut(s) 127, 665
SmlI CTYRAG 2 cut(s) 26, 188
SmoI CTYRAG 2 cut(s) 26, 188
Sse9I AATT 3 cut(s) 17, 140, 347
SseBI AGGCCT 2 cut(s) 486, 579
SsiI CCGC 3 cut(s) 233, 734, 792
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 162, 581
SstI GAGCTC 1 cut(s) 693
StuI AGGCCT 2 cut(s) 486, 579
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 4 cut(s) 458, 487, 654, 713
TaqI TCGA 1 cut(s) 637
TasI AATT 3 cut(s) 17, 140, 347
TatI WGTACW 1 cut(s) 681
TauI GCSGC 1 cut(s) 736
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 4 cut(s) 189, 212, 303, 785
Tru9I TTAA 4 cut(s) 189, 212, 303, 785
TscAI CASTG 1 cut(s) 400
TseI GCWGC 2 cut(s) 389, 764
TspDTI ATGAA 4 cut(s) 17, 153, 358, 616
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 341
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 127, 665
XapI RAATTY 2 cut(s) 140, 347
XspI CTAG 2 cut(s) 162, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.