RLG00000007913

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
22840951 .. 22842388
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007913

Sequence Viewer

Length: 1275 bp
ATGAAGTTAGAAGCTGAAGTAATCTCCAAACAGATAATCACTCCTTCTTCTCCAACCTCTGACCATCTTCGCCATTACCAGTTCTCATTTCTTGATCAAGTATCTCCCCCGGTCTATAACCCTTTGCTCCTCTTTTATGAATTCAATGCCAAAACTCAACCCAACATCACTGAAATTTCTAACCACCTGAAGACCTCTTTAGCCAAAGTCTTAACCCTTTTCTACCCACTTGCCGGACGACTCAAAGGCAACCAACACGTGGATTGCAACGACAATGGTATACCCTACTTTGAAGCTCAAGTGAACTGCAAACTCTCAGATGTTCTCGACAATCCGATACCCGGAGAACTCAACAAGCTCATGCCATTTGAACTGGACGATGTGGCAAACAAATTTGCCCTTGGTATCCAGCTTAACATCTTTCAATGTGGAGGTTTTGCTATTTCTCAGTGCCTTTCTCACAAGCTCGCAGATGGGTTATCATACTTCACGTTCAGCAAAACTTGGGCCGCCACTGCCCGTGGCGAACCCAACATAGCACATCCGCAGTTCATTTCCGCCACACTATTCCCTCCCAAGAATATAAGTGGATTAGATGAGCGCACTGGTATCACAAGAAACAAAGTGACAAAACGCTTTGTGTTTAGTGCCTCTACCATAGAGGAGCTCAGAAAAGTTCAAGCACATAAGAACTTAACACGCCCTTCACGTGTTGAGGCCTTATCTTCTTTCATCTTGAGCCGATTTATGGAGGCTACCAAAGATATTGGATCAGCTGACAAGTTTTACAGGGTGGTTCATGCTGTGAACTTGCGGCCAAGGTTCGATCCACCACTGCCGTACCATTCCTTTGGGAACCTTTACCGAATAGCCATGACAGCACCGTTACAAATAAGTTCCAGGGAACCATATCATGGTATACGAGAAGTGATAAGCAAGATCGACAATGAGTACGTGAGAAAACTACAGAAAGGTGATGAGCATTTGAGTTCCATCAAGACCCAAGCTGAACTTTTTGCTAAAGGCGAGCAGGTTATAATTAGCTTCAGTAGTTATTGCTGGTTTCCTCTGTACGATAACGATTTTGGTTGGGGGAGGCCTACATGGGTGGGGTTACCGGCACTGACGTTCAAGAACATAGTGAACTTCATGGATACCAAAGAGGGTGGTGGAATTGAGGCTTATATTAGCTTGGAGGCGGAAGTCATGACTAAGTTTGAGAGCGATGTGGAGCTCTTAGCTTATGTGTCTCCAAGTGCGCTGCTGAACGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.77

Weight (kDa)

7.17

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 412 4.5e-74 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
Acc36I ACCTGC 1 cut(s) 1021
AccB7I CCANNNNNTGG 2 cut(s) 259, 914
AccI GTMKAC 2 cut(s) 280, 919
AciI CCGC 5 cut(s) 510, 545, 558, 814, 1199
AclI AACGTT 1 cut(s) 1269
AclWI GGATC 2 cut(s) 778, 821
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 3 cut(s) 140, 174, 392
AcuI CTGAAG 3 cut(s) 36, 209, 1030
AcvI CACGTG 2 cut(s) 259, 710
AfaI GTAC 3 cut(s) 842, 953, 1073
AfiI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
AflIII ACRYGT 2 cut(s) 256, 709
AgsI TTSAA 6 cut(s) 145, 293, 371, 425, 680, 1132
AjnI CCWGG 1 cut(s) 899
Alw21I GWGCWC 2 cut(s) 669, 1236
Alw26I GTCTC 1 cut(s) 1254
AlwI GGATC 2 cut(s) 778, 821
AoxI GGCC 4 cut(s) 507, 717, 815, 1097
ApeKI GCWGC 1 cut(s) 1261
ApoI RAATTY 3 cut(s) 140, 174, 392
AspLEI GCGC 2 cut(s) 603, 1261
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 2 cut(s) 110, 342
AsuHPI GGTGA 1 cut(s) 986
BaeI ACNNNNGTAYC 2 cut(s) 824, 857
BanII GRGCYC 2 cut(s) 669, 1236
BbrPI CACGTG 2 cut(s) 259, 710
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 669, 1236
BbvI GCAGC 1 cut(s) 1248
BccI CCATC 3 cut(s) 72, 467, 1001
BceAI ACGGC 1 cut(s) 823
BciT130I CCWGG 1 cut(s) 901
BciVI GTATCC 2 cut(s) 416, 1147
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 110, 342
BcoDI GTCTC 1 cut(s) 1254
BfmI CTRYAG 1 cut(s) 965
BfuAI ACCTGC 1 cut(s) 1021
BfuI GTATCC 2 cut(s) 416, 1147
BisI GCNGC 3 cut(s) 510, 815, 1262
BlsI GCNGC 3 cut(s) 511, 816, 1263
Bme1390I CCNGG 3 cut(s) 110, 342, 901
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 857, 906
BmrFI CCNGG 3 cut(s) 110, 342, 901
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 2 cut(s) 282, 757
BpuMI CCSGG 2 cut(s) 110, 342
BsaAI YACGTR 3 cut(s) 259, 710, 955
BsaJI CCNNGG 5 cut(s) 108, 400, 520, 818, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
Bse118I RCCGGY 1 cut(s) 1117
Bse1I ACTGG 3 cut(s) 79, 378, 610
BseBI CCWGG 1 cut(s) 901
BseDI CCNNGG 5 cut(s) 108, 400, 520, 818, 900
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
BseMII CTCAG 3 cut(s) 330, 461, 682
BseNI ACTGG 3 cut(s) 79, 378, 610
BseRI GAGGAG 2 cut(s) 119, 677
BseXI GCAGC 1 cut(s) 1248
BshFI GGCC 4 cut(s) 509, 719, 817, 1099
BsiHKAI GWGCWC 2 cut(s) 669, 1236
BsiSI CCGG 4 cut(s) 110, 234, 342, 1118
BslI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
BsmAI GTCTC 1 cut(s) 1254
BsnI GGCC 4 cut(s) 509, 719, 817, 1099
Bsp1286I GDGCHC 2 cut(s) 669, 1236
Bsp143I GATC 4 cut(s) 94, 770, 826, 939
BspACI CCGC 5 cut(s) 510, 545, 558, 814, 1199
BspANI GGCC 4 cut(s) 509, 719, 817, 1099
BspCNI CTCAG 3 cut(s) 329, 460, 681
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 2 cut(s) 857, 906
BspMI ACCTGC 1 cut(s) 1021
BspPI GGATC 2 cut(s) 778, 821
BsrFI RCCGGY 1 cut(s) 1117
BsrI ACTGG 3 cut(s) 79, 378, 610
BssAI RCCGGY 1 cut(s) 1117
BssECI CCNNGG 5 cut(s) 108, 400, 520, 818, 900
BssMI GATC 4 cut(s) 94, 770, 826, 939
BssNAI GTATAC 2 cut(s) 281, 920
BssT1I CCWWGG 2 cut(s) 400, 818
Bst1107I GTATAC 2 cut(s) 281, 920
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 1 cut(s) 885
BstBAI YACGTR 3 cut(s) 259, 710, 955
BstC8I GCNNGC 2 cut(s) 468, 1028
BstDEI CTNAG 5 cut(s) 316, 447, 668, 1212, 1237
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 1113
BstF5I GGATG 1 cut(s) 541
BstHHI GCGC 2 cut(s) 603, 1261
BstKTI GATC 4 cut(s) 97, 773, 829, 942
BstMAI GTCTC 1 cut(s) 1254
BstMBI GATC 4 cut(s) 94, 770, 826, 939
BstMWI GCNNNNNNNGC 2 cut(s) 515, 878
BstNI CCWGG 1 cut(s) 901
BstPI GGTNACC 1 cut(s) 1113
BstSCI CCNGG 3 cut(s) 108, 340, 899
BstSFI CTRYAG 1 cut(s) 965
BstV1I GCAGC 1 cut(s) 1248
BstV2I GAAGAC 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 851
BstZ17I GTATAC 2 cut(s) 281, 920
BsuI GTATCC 2 cut(s) 416, 1147
BsuRI GGCC 4 cut(s) 509, 719, 817, 1099
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 1239
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 2 cut(s) 513, 833
BtsIMutI CAGTG 6 cut(s) 168, 455, 513, 603, 833, 1121
BveI ACCTGC 1 cut(s) 1021
Cac8I GCNNGC 2 cut(s) 468, 1028
CciI TCATGA 1 cut(s) 1206
CfoI GCGC 2 cut(s) 603, 1261
Cfr10I RCCGGY 1 cut(s) 1117
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 3 cut(s) 841, 952, 1072
CspCI CAANNNNNGTGG 2 cut(s) 1147, 1182
CviAII CATG 7 cut(s) 361, 800, 874, 914, 1104, 1150, 1207
CviQI GTAC 3 cut(s) 841, 952, 1072
DdeI CTNAG 5 cut(s) 316, 447, 668, 1212, 1237
DpnI GATC 4 cut(s) 96, 772, 828, 941
DpnII GATC 4 cut(s) 94, 770, 826, 939
EaeI YGGCCR 1 cut(s) 815
EciI GGCGGA 2 cut(s) 547, 1214
Ecl136II GAGCTC 2 cut(s) 667, 1234
Eco130I CCWWGG 2 cut(s) 400, 818
Eco147I AGGCCT 2 cut(s) 719, 1099
Eco24I GRGCYC 2 cut(s) 669, 1236
Eco53kI GAGCTC 2 cut(s) 667, 1234
Eco57I CTGAAG 3 cut(s) 36, 209, 1030
Eco72I CACGTG 2 cut(s) 259, 710
Eco91I GGTNACC 1 cut(s) 1113
EcoICRI GAGCTC 2 cut(s) 667, 1234
EcoO65I GGTNACC 1 cut(s) 1113
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 899
EcoT14I CCWWGG 2 cut(s) 400, 818
EcoT38I GRGCYC 2 cut(s) 669, 1236
ErhI CCWWGG 2 cut(s) 400, 818
FaeI CATG 7 cut(s) 364, 803, 877, 917, 1107, 1153, 1210
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FatI CATG 7 cut(s) 360, 799, 873, 913, 1103, 1149, 1206
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 2 cut(s) 280, 919
Fnu4HI GCNGC 3 cut(s) 510, 815, 1262
FokI GGATG 1 cut(s) 528
FriOI GRGCYC 2 cut(s) 669, 1236
Fsp4HI GCNGC 3 cut(s) 510, 815, 1262
GlaI GCGC 2 cut(s) 602, 1260
GluI GCNGC 3 cut(s) 510, 815, 1262
HaeIII GGCC 4 cut(s) 509, 719, 817, 1099
HapII CCGG 4 cut(s) 110, 234, 342, 1118
HhaI GCGC 2 cut(s) 603, 1261
Hin1II CATG 7 cut(s) 364, 803, 877, 917, 1107, 1153, 1210
Hin6I GCGC 2 cut(s) 601, 1259
HinP1I GCGC 2 cut(s) 601, 1259
HinfI GANTC 1 cut(s) 240
HpaII CCGG 4 cut(s) 110, 234, 342, 1118
HphI GGTGA 1 cut(s) 986
Hpy166II GTNNAC 5 cut(s) 281, 304, 808, 920, 1144
Hpy188I TCNGA 4 cut(s) 61, 319, 336, 671
Hpy188III TCNNGA 6 cut(s) 92, 326, 736, 997, 1132, 1207
Hpy8I GTNNAC 5 cut(s) 281, 304, 808, 920, 1144
HpyAV CCTTC 2 cut(s) 54, 714
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 6 cut(s) 258, 491, 709, 954, 1127, 1269
HpyCH4V TGCA 2 cut(s) 267, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 878
HpyF3I CTNAG 5 cut(s) 316, 447, 668, 1212, 1237
HpySE526I ACGT 6 cut(s) 258, 491, 709, 954, 1127, 1269
Hsp92II CATG 7 cut(s) 364, 803, 877, 917, 1107, 1153, 1210
HspAI GCGC 2 cut(s) 601, 1259
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 770, 826, 939
LmnI GCTCC 3 cut(s) 132, 664, 1231
Lsp1109I GCAGC 1 cut(s) 1248
MaeII ACGT 6 cut(s) 258, 491, 709, 954, 1127, 1269
MaeIII GTNAC 3 cut(s) 625, 885, 1113
MalI GATC 4 cut(s) 96, 772, 828, 941
MboI GATC 4 cut(s) 94, 770, 826, 939
MboII GAAGA 4 cut(s) 39, 59, 202, 717
MhlI GDGCHC 2 cut(s) 669, 1236
MluCI AATT 5 cut(s) 140, 174, 392, 1038, 1173
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 77
MseI TTAA 4 cut(s) 212, 414, 695, 1273
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 4 cut(s) 110, 234, 342, 1118
MspR9I CCNGG 3 cut(s) 110, 342, 901
MvaI CCWGG 1 cut(s) 901
MwoI GCNNNNNNNGC 2 cut(s) 515, 878
NciI CCSGG 2 cut(s) 110, 342
NdeII GATC 4 cut(s) 94, 770, 826, 939
NlaIII CATG 7 cut(s) 364, 803, 877, 917, 1107, 1153, 1210
NlaIV GGNNCC 2 cut(s) 857, 906
NmuCI GTSAC 1 cut(s) 625
PagI TCATGA 1 cut(s) 1206
PceI AGGCCT 2 cut(s) 719, 1099
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PflMI CCANNNNNTGG 2 cut(s) 259, 914
PkrI GCNGC 3 cut(s) 511, 816, 1263
PleI GAGTC 1 cut(s) 234
PmaCI CACGTG 2 cut(s) 259, 710
PmlI CACGTG 2 cut(s) 259, 710
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 3 cut(s) 259, 710, 955
PsiI TTATAA 1 cut(s) 1037
Psp124BI GAGCTC 2 cut(s) 669, 1236
Psp1406I AACGTT 1 cut(s) 1269
Psp6I CCWGG 1 cut(s) 899
PspCI CACGTG 2 cut(s) 259, 710
PspEI GGTNACC 1 cut(s) 1113
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 857, 906
PspPI GGNCC 1 cut(s) 507
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 3 cut(s) 842, 953, 1073
RsaNI GTAC 3 cut(s) 841, 952, 1072
SacI GAGCTC 2 cut(s) 669, 1236
SaqAI TTAA 4 cut(s) 212, 414, 695, 1273
SatI GCNGC 3 cut(s) 510, 815, 1262
Sau3AI GATC 4 cut(s) 94, 770, 826, 939
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 110, 342, 901
SduI GDGCHC 2 cut(s) 669, 1236
SfcI CTRYAG 1 cut(s) 965
SmlI CTYRAG 2 cut(s) 297, 736
SmoI CTYRAG 2 cut(s) 297, 736
Sse9I AATT 5 cut(s) 140, 174, 392, 1038, 1173
SseBI AGGCCT 2 cut(s) 719, 1099
SsiI CCGC 5 cut(s) 510, 545, 558, 814, 1199
SstI GAGCTC 2 cut(s) 669, 1236
StuI AGGCCT 2 cut(s) 719, 1099
StyD4I CCNGG 3 cut(s) 108, 340, 899
StyI CCWWGG 2 cut(s) 400, 818
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 6 cut(s) 261, 494, 712, 957, 1130, 1272
TaqI TCGA 3 cut(s) 327, 825, 942
TasI AATT 5 cut(s) 140, 174, 392, 1038, 1173
TauI GCSGC 2 cut(s) 512, 817
Tru1I TTAA 4 cut(s) 212, 414, 695, 1273
Tru9I TTAA 4 cut(s) 212, 414, 695, 1273
TscAI CASTG 6 cut(s) 175, 455, 520, 610, 840, 1128
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 1 cut(s) 1261
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 6 cut(s) 17, 153, 541, 721, 788, 1138
TspRI CASTG 6 cut(s) 175, 455, 520, 610, 840, 1128
Van91I CCANNNNNTGG 2 cut(s) 259, 914
XapI RAATTY 3 cut(s) 140, 174, 392
XmiI GTMKAC 2 cut(s) 280, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.