Rw4G017830

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
39979630 .. 39980907
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017830.1

Sequence Viewer

Length: 1278 bp
ATGAAGATAGAAGCTGAAGTAATCTCCAAACAAATTATCACTCCTTCTTCTCCAACCTCTGACCATCTTCGCCATTACCAGTTCTCATTTCTTGATCAAATATCTCCCCCCGTCTATAACCCTTTGCTCCTCTTTTATGAATTCAATGCCAAAACTCAACCCAACATCACTGAAATATCCAACCACCTGAAGACCTCCTTAGCCAAAGTCTTAACCCTTTTCTACCCACTAGCCGGACGACTCAATGGCAACCAACACGTGGATTGCAACGACAATGGTATACCCTTCCTTGAAGCTCAAGTGAACTGCAAACTCTCAGATGTTCTCGACAATCCGATACCCGGAGAACTCAACAAGCTCATGCCATTTGCACTGGACGATGTGGCAAACAAATTTGCCCTTGGTATCCAGCTCAACATCTTTCAATGTGGTGGTTTTGCTATTGCTCAGTGCGTTTCTCACAAGCTCGCAGATGGGTTATCATACTTCACGTTCAGCAAAACTTGGGCCGCCACTGCCCGTGGCGAACCCAACATAGCACGTCCGCAGTTCATTTCCGCCACACTATTCCCTCCCAAGAATTTAAGTGGATTTGATGCGCGCACTGGTATCACAAGAAACAAAGTGACAAAACGCTTTGTGTTTAGTGCCTCTAACATAGAGGAGCTCAGAAAAGTTCAAGCACATAAGAACTTAACACGCCCTTCACGTGTTGAGGCCTTATCTTGTTTCATCTTGAGCCGATTTATGGAGGCTACCAAAGATATTGGATCAGCTGACAAGTTTTACAGGGTGGTTCATGCTGTGAACTTGCGGCCGAGGTTCGACCCACCACTGCCGCACCATTCTTTTGGGAACCTTTACCGAATAGCCATGACAGCACCGTTACAAATAAGTTCCTGCAGGGAACCATATCATGGTATACGAAAAGTGATAAGCAAGATCGACAATGAGTACGTGAGAAAACTGCAGAAGGGTGATGAGCATTTGAGTTTCATCAAGACCCAAGCTGAACTTTTTGCTAAAGGCGAGCAGGTTATAATTAGCTTCAGTAGTTATTGCTGGTTTCCTCTGTATGATAGCGATTTTGGTTGGGGGAGGCCTACGTGGGTGGGGTTACCGGCATTGACGTTCAAGAACATAGTGAACTTCATGGATACCAAAGAGGGTGGTGGAATTGAGGCTTATATTAGCTTGGAGGAGGAAGTCATGACTAGGTTTGAGAGCGATATGGAGCTCTTAGCTTATGTGTCTCCAAGTGCGGTGCTGAACGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.87

Weight (kDa)

8.34

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 413 2.9e-75 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
Acc36I ACCTGC 1 cut(s) 1024
AccB7I CCANNNNNTGG 2 cut(s) 259, 917
AccI GTMKAC 2 cut(s) 280, 922
AccII CGCG 1 cut(s) 601
AciI CCGC 6 cut(s) 510, 545, 558, 814, 839, 1262
AclI AACGTT 1 cut(s) 1272
AclWI GGATC 1 cut(s) 778
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 3 cut(s) 140, 392, 580
AcuI CTGAAG 3 cut(s) 36, 209, 1033
AcvI CACGTG 2 cut(s) 259, 710
AfaI GTAC 1 cut(s) 956
AfiI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 917
AflIII ACRYGT 2 cut(s) 256, 709
AgsI TTSAA 5 cut(s) 145, 293, 425, 680, 1135
AjiI CACGTC 1 cut(s) 542
Alw21I GWGCWC 2 cut(s) 669, 1239
Alw26I GTCTC 1 cut(s) 1257
AlwI GGATC 1 cut(s) 778
AoxI GGCC 4 cut(s) 507, 717, 815, 1100
ApoI RAATTY 3 cut(s) 140, 392, 580
AspLEI GCGC 2 cut(s) 601, 603
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 989
BanII GRGCYC 2 cut(s) 669, 1239
BbrPI CACGTG 2 cut(s) 259, 710
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 669, 1239
BccI CCATC 2 cut(s) 72, 467
BciVI GTATCC 2 cut(s) 416, 1150
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 1257
BfaI CTAG 2 cut(s) 230, 1215
BfmI CTRYAG 2 cut(s) 901, 968
BfuAI ACCTGC 1 cut(s) 1024
BfuI GTATCC 2 cut(s) 416, 1150
BisI GCNGC 3 cut(s) 510, 815, 839
BlsI GCNGC 3 cut(s) 511, 816, 840
Bme1390I CCNGG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 857, 909
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 2 cut(s) 282, 757
BpuMI CCSGG 1 cut(s) 342
BsaAI YACGTR 4 cut(s) 259, 710, 958, 1107
BsaJI CCNNGG 3 cut(s) 400, 520, 818
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 917
Bse118I RCCGGY 1 cut(s) 1120
Bse1I ACTGG 3 cut(s) 79, 378, 610
BseDI CCNNGG 3 cut(s) 400, 520, 818
BseLI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 917
BseMII CTCAG 3 cut(s) 330, 461, 682
BseNI ACTGG 3 cut(s) 79, 378, 610
BsePI GCGCGC 1 cut(s) 599
BseRI GAGGAG 3 cut(s) 119, 677, 1214
BseX3I CGGCCG 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 601
Bsh1285I CGRYCG 1 cut(s) 818
BshFI GGCC 4 cut(s) 509, 719, 817, 1102
BsiEI CGRYCG 1 cut(s) 818
BsiHKAI GWGCWC 2 cut(s) 669, 1239
BsiSI CCGG 3 cut(s) 234, 342, 1121
BslI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 917
BsmAI GTCTC 1 cut(s) 1257
BsnI GGCC 4 cut(s) 509, 719, 817, 1102
Bsp1286I GDGCHC 2 cut(s) 669, 1239
Bsp143I GATC 3 cut(s) 94, 770, 942
BspACI CCGC 6 cut(s) 510, 545, 558, 814, 839, 1262
BspANI GGCC 4 cut(s) 509, 719, 817, 1102
BspCNI CTCAG 3 cut(s) 329, 460, 681
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 1209
BspLI GGNNCC 2 cut(s) 857, 909
BspMAI CTGCAG 2 cut(s) 905, 972
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 1 cut(s) 778
BsrFI RCCGGY 1 cut(s) 1120
BsrI ACTGG 3 cut(s) 79, 378, 610
BssAI RCCGGY 1 cut(s) 1120
BssECI CCNNGG 3 cut(s) 400, 520, 818
BssHII GCGCGC 1 cut(s) 599
BssMI GATC 3 cut(s) 94, 770, 942
BssNAI GTATAC 2 cut(s) 281, 923
BssT1I CCWWGG 1 cut(s) 400
Bst1107I GTATAC 2 cut(s) 281, 923
Bst4CI ACNGT 1 cut(s) 885
BstBAI YACGTR 4 cut(s) 259, 710, 958, 1107
BstC8I GCNNGC 3 cut(s) 468, 601, 1031
BstDEI CTNAG 5 cut(s) 199, 316, 447, 668, 1240
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 1116
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 2 cut(s) 601, 603
BstKTI GATC 3 cut(s) 97, 773, 945
BstMAI GTCTC 1 cut(s) 1257
BstMBI GATC 3 cut(s) 94, 770, 942
BstMCI CGRYCG 1 cut(s) 818
BstMWI GCNNNNNNNGC 2 cut(s) 515, 878
BstPI GGTNACC 1 cut(s) 1116
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 2 cut(s) 901, 968
BstUI CGCG 1 cut(s) 601
BstV2I GAAGAC 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 851
BstZ17I GTATAC 2 cut(s) 281, 923
BstZI CGGCCG 1 cut(s) 815
BsuI GTATCC 2 cut(s) 416, 1150
BsuRI GGCC 4 cut(s) 509, 719, 817, 1102
BtgI CCRYGG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 542
BtsI GCAGTG 2 cut(s) 513, 833
BtsIMutI CAGTG 6 cut(s) 168, 371, 455, 513, 603, 833
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 3 cut(s) 468, 601, 1031
CciI TCATGA 1 cut(s) 1209
CfoI GCGC 2 cut(s) 601, 603
Cfr10I RCCGGY 1 cut(s) 1120
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 1 cut(s) 955
CspCI CAANNNNNGTGG 2 cut(s) 1150, 1185
CviAII CATG 6 cut(s) 361, 800, 874, 917, 1153, 1210
CviQI GTAC 1 cut(s) 955
DdeI CTNAG 5 cut(s) 199, 316, 447, 668, 1240
DpnI GATC 3 cut(s) 96, 772, 944
DpnII GATC 3 cut(s) 94, 770, 942
EaeI YGGCCR 1 cut(s) 815
EagI CGGCCG 1 cut(s) 815
EciI GGCGGA 1 cut(s) 547
Ecl136II GAGCTC 2 cut(s) 667, 1237
EclXI CGGCCG 1 cut(s) 815
Eco130I CCWWGG 1 cut(s) 400
Eco147I AGGCCT 2 cut(s) 719, 1102
Eco24I GRGCYC 2 cut(s) 669, 1239
Eco52I CGGCCG 1 cut(s) 815
Eco53kI GAGCTC 2 cut(s) 667, 1237
Eco57I CTGAAG 3 cut(s) 36, 209, 1033
Eco72I CACGTG 2 cut(s) 259, 710
Eco91I GGTNACC 1 cut(s) 1116
EcoICRI GAGCTC 2 cut(s) 667, 1237
EcoO65I GGTNACC 1 cut(s) 1116
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 2 cut(s) 669, 1239
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 6 cut(s) 364, 803, 877, 920, 1156, 1213
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 999, 1031
FatI CATG 6 cut(s) 360, 799, 873, 916, 1152, 1209
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 2 cut(s) 280, 922
Fnu4HI GCNGC 3 cut(s) 510, 815, 839
FriOI GRGCYC 2 cut(s) 669, 1239
Fsp4HI GCNGC 3 cut(s) 510, 815, 839
FspBI CTAG 2 cut(s) 230, 1215
GlaI GCGC 2 cut(s) 600, 602
GluI GCNGC 3 cut(s) 510, 815, 839
HaeIII GGCC 4 cut(s) 509, 719, 817, 1102
HapII CCGG 3 cut(s) 234, 342, 1121
HhaI GCGC 2 cut(s) 601, 603
Hin1II CATG 6 cut(s) 364, 803, 877, 920, 1156, 1213
Hin6I GCGC 2 cut(s) 599, 601
HinP1I GCGC 2 cut(s) 599, 601
HinfI GANTC 1 cut(s) 240
HpaII CCGG 3 cut(s) 234, 342, 1121
HphI GGTGA 1 cut(s) 989
Hpy166II GTNNAC 5 cut(s) 281, 304, 808, 923, 1147
Hpy188I TCNGA 4 cut(s) 61, 319, 336, 671
Hpy188III TCNNGA 6 cut(s) 92, 326, 736, 1000, 1135, 1210
Hpy8I GTNNAC 5 cut(s) 281, 304, 808, 923, 1147
HpyAV CCTTC 4 cut(s) 54, 295, 714, 967
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 8 cut(s) 258, 491, 541, 709, 957, 1106, 1130, 1272
HpyCH4V TGCA 5 cut(s) 267, 309, 371, 903, 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 878
HpyF3I CTNAG 5 cut(s) 199, 316, 447, 668, 1240
HpySE526I ACGT 8 cut(s) 258, 491, 541, 709, 957, 1106, 1130, 1272
Hsp92II CATG 6 cut(s) 364, 803, 877, 920, 1156, 1213
HspAI GCGC 2 cut(s) 599, 601
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 94, 770, 942
LmnI GCTCC 3 cut(s) 132, 664, 1234
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 230, 1215
MaeII ACGT 8 cut(s) 258, 491, 541, 709, 957, 1106, 1130, 1272
MaeIII GTNAC 3 cut(s) 625, 885, 1116
MalI GATC 3 cut(s) 96, 772, 944
MboI GATC 3 cut(s) 94, 770, 942
MboII GAAGA 4 cut(s) 16, 39, 59, 202
MhlI GDGCHC 2 cut(s) 669, 1239
MluCI AATT 6 cut(s) 33, 140, 392, 580, 1041, 1176
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 77, 204
MseI TTAA 4 cut(s) 212, 584, 695, 1276
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 3 cut(s) 234, 342, 1121
MspR9I CCNGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 515, 878
NciI CCSGG 1 cut(s) 342
NdeII GATC 3 cut(s) 94, 770, 942
NlaIII CATG 6 cut(s) 364, 803, 877, 920, 1156, 1213
NlaIV GGNNCC 2 cut(s) 857, 909
NmeAIII GCCGAG 1 cut(s) 843
NmuCI GTSAC 1 cut(s) 625
PagI TCATGA 1 cut(s) 1209
PauI GCGCGC 1 cut(s) 599
PceI AGGCCT 2 cut(s) 719, 1102
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PflMI CCANNNNNTGG 2 cut(s) 259, 917
PkrI GCNGC 3 cut(s) 511, 816, 840
PleI GAGTC 1 cut(s) 234
PmaCI CACGTG 2 cut(s) 259, 710
PmlI CACGTG 2 cut(s) 259, 710
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 4 cut(s) 259, 710, 958, 1107
PsiI TTATAA 1 cut(s) 1040
Psp124BI GAGCTC 2 cut(s) 669, 1239
Psp1406I AACGTT 1 cut(s) 1272
PspCI CACGTG 2 cut(s) 259, 710
PspEI GGTNACC 1 cut(s) 1116
PspN4I GGNNCC 2 cut(s) 857, 909
PspPI GGNCC 1 cut(s) 507
PstI CTGCAG 2 cut(s) 905, 972
PteI GCGCGC 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 1 cut(s) 956
RsaNI GTAC 1 cut(s) 955
SacI GAGCTC 2 cut(s) 669, 1239
SaqAI TTAA 4 cut(s) 212, 584, 695, 1276
SatI GCNGC 3 cut(s) 510, 815, 839
Sau3AI GATC 3 cut(s) 94, 770, 942
Sau96I GGNCC 1 cut(s) 507
SbfI CCTGCAGG 1 cut(s) 905
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 342
SdaI CCTGCAGG 1 cut(s) 905
SduI GDGCHC 2 cut(s) 669, 1239
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 901, 968
SmlI CTYRAG 2 cut(s) 297, 736
SmoI CTYRAG 2 cut(s) 297, 736
Sse8387I CCTGCAGG 1 cut(s) 905
Sse9I AATT 6 cut(s) 33, 140, 392, 580, 1041, 1176
SseBI AGGCCT 2 cut(s) 719, 1102
SsiI CCGC 6 cut(s) 510, 545, 558, 814, 839, 1262
SspMI CTAG 2 cut(s) 230, 1215
SstI GAGCTC 2 cut(s) 669, 1239
StuI AGGCCT 2 cut(s) 719, 1102
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 8 cut(s) 261, 494, 544, 712, 960, 1109, 1133, 1275
TaqI TCGA 3 cut(s) 327, 825, 945
TasI AATT 6 cut(s) 33, 140, 392, 580, 1041, 1176
TauI GCSGC 3 cut(s) 512, 817, 841
Tru1I TTAA 4 cut(s) 212, 584, 695, 1276
Tru9I TTAA 4 cut(s) 212, 584, 695, 1276
TscAI CASTG 6 cut(s) 175, 378, 455, 520, 610, 840
TseFI GTSAC 1 cut(s) 625
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 7 cut(s) 17, 153, 541, 721, 788, 985, 1141
TspRI CASTG 6 cut(s) 175, 378, 455, 520, 610, 840
Van91I CCANNNNNTGG 2 cut(s) 259, 917
XapI RAATTY 3 cut(s) 140, 392, 580
XmiI GTMKAC 2 cut(s) 280, 922
XspI CTAG 2 cut(s) 230, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.