Rmu_ssc0000361.1_g000005

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000361.1
OG0000622
Physical Location & Seq
Reverse (-)
33513 .. 34784
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000361.1_g000005.1.cds

Sequence Viewer

Length: 1272 bp
atgaagttagaagctgaagtcatctccaaacagattatcactccttcttctccaacccctgaacatcttcgccattaccagttctcatttcttgatcaaatatctcccccggtctataaccctttgatccttttttatgaattcaatgccaaaactcaacccaacatcactgaaatatccaaccacctgaagacctccttagctaaagtcttaaccctattctacccactagccggacgaatcgaaggcaaccaacatgtggattgcaatgacaatggtataccctaccttgaagctcaagtgaactgcaaactctcaaatgttctcgacaatccattacccggagaacttaacaaactcatgccatttgagttggacgatgtggcaaacaaatttgcccttggtgtccagctcaacatctttcaatgtggtggttttgctattgctcagtgcctttctcacaagctcgcagacgggttatcatacttcacattcagcaaaacttgggcggccaccgcccgtgacgaacccaaaatagcacatccacagttcatttccgccacactattccctcccaagaatttaagtggatttgatgcacgcactggtatcacaagaaacaaagtgacaaaacgatttgtgttcagtgcctctaacatagaggagctcagaaaagttcaagcacataaggccttaacacgacctacacgagttgaggccttatcttctttcatcttgaaccgatttatggaggttaccaaagacatgggatcagttgacaagttttacagggtggttcatgctgtgaacttgcggccaaggttcgacccaccactgccgcaccattcctttgggaacctttaccgaatcgccctaacagctccgttacaaataagttccaaggaaccatatcatggtatacgagaagcggtaagcaagatcgacaatgagtacgtgagaaaactacagaaaggtgatgagcatttgagttccatcaagacctatgctaaaagttttgctaaaggcgagcaggttatacttagcttcagtagttattgctggtttcctctgtacgataacgattttggttgggggaggcctacgtgggtggggtcgccggcactgatgttcaagaacctagtgaacttcatggataccaaagagggtgatggaattgaggtttatattagcttggaggaggaagtcatgactaagtttgagagcgatgtggagctcttagcttatgtgtctccaagtgcagtgctgaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

423

Amino Acids

47.81

Weight (kDa)

7.19

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1021
AccB7I CCANNNNNTGG 2 cut(s) 259, 914
AccI GTMKAC 2 cut(s) 280, 919
AciI CCGC 6 cut(s) 509, 516, 558, 814, 839, 929
AclWI GGATC 2 cut(s) 121, 778
AcoI YGGCCR 2 cut(s) 510, 815
AcsI RAATTY 3 cut(s) 140, 392, 580
AcuI CTGAAG 3 cut(s) 36, 209, 1030
AfaI GTAC 2 cut(s) 953, 1073
AfiI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 6 cut(s) 145, 293, 425, 680, 739, 1132
Alw21I GWGCWC 2 cut(s) 669, 1236
Alw26I GTCTC 1 cut(s) 1254
AlwI GGATC 2 cut(s) 121, 778
AoxI GGCC 5 cut(s) 510, 690, 717, 815, 1097
ApoI RAATTY 3 cut(s) 140, 392, 580
Asp700I GAANNNNTTC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 110, 342
AsuHPI GGTGA 2 cut(s) 986, 1178
BanII GRGCYC 2 cut(s) 669, 1236
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 669, 1236
BccI CCATC 2 cut(s) 1001, 1163
BciVI GTATCC 1 cut(s) 1147
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 110, 342
BcoDI GTCTC 1 cut(s) 1254
BfaI CTAG 2 cut(s) 230, 1139
BfmI CTRYAG 1 cut(s) 965
BfuAI ACCTGC 1 cut(s) 1021
BfuI GTATCC 1 cut(s) 1147
BisI GCNGC 3 cut(s) 510, 815, 839
BlsI GCNGC 3 cut(s) 511, 816, 840
Bme1390I CCNGG 2 cut(s) 110, 342
BmiI GGNNCC 2 cut(s) 857, 906
BmrFI CCNGG 2 cut(s) 110, 342
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 2 cut(s) 110, 342
BsaAI YACGTR 2 cut(s) 955, 1104
BsaJI CCNNGG 4 cut(s) 108, 400, 818, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
Bse118I RCCGGY 1 cut(s) 1117
Bse1I ACTGG 2 cut(s) 79, 610
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 4 cut(s) 108, 400, 818, 900
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 461, 682
BseNI ACTGG 2 cut(s) 79, 610
BseRI GAGGAG 2 cut(s) 677, 1211
BshFI GGCC 5 cut(s) 512, 692, 719, 817, 1099
BsiHKAI GWGCWC 2 cut(s) 669, 1236
BsiSI CCGG 4 cut(s) 110, 234, 342, 1118
BslI CCNNNNNNNGG 5 cut(s) 233, 259, 341, 748, 914
BsmAI GTCTC 1 cut(s) 1254
BsnI GGCC 5 cut(s) 512, 692, 719, 817, 1099
Bsp1286I GDGCHC 2 cut(s) 669, 1236
Bsp143I GATC 4 cut(s) 94, 126, 770, 939
BspACI CCGC 6 cut(s) 509, 516, 558, 814, 839, 929
BspANI GGCC 5 cut(s) 512, 692, 719, 817, 1099
BspCNI CTCAG 2 cut(s) 460, 681
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 2 cut(s) 857, 906
BspMI ACCTGC 1 cut(s) 1021
BspPI GGATC 2 cut(s) 121, 778
BsrDI GCAATG 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 1117
BsrI ACTGG 2 cut(s) 79, 610
BssAI RCCGGY 1 cut(s) 1117
BssECI CCNNGG 4 cut(s) 108, 400, 818, 900
BssMI GATC 4 cut(s) 94, 126, 770, 939
BssNAI GTATAC 2 cut(s) 281, 920
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 3 cut(s) 400, 818, 900
Bst1107I GTATAC 2 cut(s) 281, 920
Bst2BI CACGAG 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 549
BstBAI YACGTR 2 cut(s) 955, 1104
BstC8I GCNNGC 4 cut(s) 468, 601, 1028, 1119
BstDEI CTNAG 6 cut(s) 199, 447, 668, 1040, 1212, 1237
BstEII GGTNACC 1 cut(s) 754
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 4 cut(s) 97, 129, 773, 942
BstMAI GTCTC 1 cut(s) 1254
BstMBI GATC 4 cut(s) 94, 126, 770, 939
BstMWI GCNNNNNNNGC 3 cut(s) 515, 689, 878
BstNSI RCATGY 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 754
BstSCI CCNGG 2 cut(s) 108, 340
BstSFI CTRYAG 1 cut(s) 965
BstV2I GAAGAC 1 cut(s) 197
BstXI CCANNNNNNTGG 2 cut(s) 766, 851
BstZ17I GTATAC 2 cut(s) 281, 920
BsuI GTATCC 1 cut(s) 1147
BsuRI GGCC 5 cut(s) 512, 692, 719, 817, 1099
BtgZI GCGATG 1 cut(s) 1239
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 2 cut(s) 833, 1266
BtsIMutI CAGTG 7 cut(s) 168, 455, 603, 652, 833, 1121, 1266
BveI ACCTGC 1 cut(s) 1021
Cac8I GCNNGC 4 cut(s) 468, 601, 1028, 1119
CciI TCATGA 1 cut(s) 1206
Cfr10I RCCGGY 1 cut(s) 1117
Csp6I GTAC 2 cut(s) 952, 1072
CviAII CATG 7 cut(s) 257, 361, 766, 800, 914, 1150, 1207
CviQI GTAC 2 cut(s) 952, 1072
DdeI CTNAG 6 cut(s) 199, 447, 668, 1040, 1212, 1237
DpnI GATC 4 cut(s) 96, 128, 772, 941
DpnII GATC 4 cut(s) 94, 126, 770, 939
EaeI YGGCCR 2 cut(s) 510, 815
EciI GGCGGA 1 cut(s) 547
Ecl136II GAGCTC 2 cut(s) 667, 1234
Eco130I CCWWGG 3 cut(s) 400, 818, 900
Eco147I AGGCCT 3 cut(s) 692, 719, 1099
Eco24I GRGCYC 2 cut(s) 669, 1236
Eco53kI GAGCTC 2 cut(s) 667, 1234
Eco57I CTGAAG 3 cut(s) 36, 209, 1030
Eco91I GGTNACC 1 cut(s) 754
EcoICRI GAGCTC 2 cut(s) 667, 1234
EcoO65I GGTNACC 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 3 cut(s) 400, 818, 900
EcoT38I GRGCYC 2 cut(s) 669, 1236
ErhI CCWWGG 3 cut(s) 400, 818, 900
FaeI CATG 7 cut(s) 260, 364, 769, 803, 917, 1153, 1210
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 7 cut(s) 256, 360, 765, 799, 913, 1149, 1206
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 2 cut(s) 280, 919
Fnu4HI GCNGC 3 cut(s) 510, 815, 839
FokI GGATG 1 cut(s) 528
FriOI GRGCYC 2 cut(s) 669, 1236
Fsp4HI GCNGC 3 cut(s) 510, 815, 839
FspBI CTAG 2 cut(s) 230, 1139
GluI GCNGC 3 cut(s) 510, 815, 839
HaeIII GGCC 5 cut(s) 512, 692, 719, 817, 1099
HapII CCGG 4 cut(s) 110, 234, 342, 1118
Hin1II CATG 7 cut(s) 260, 364, 769, 803, 917, 1153, 1210
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 2 cut(s) 240, 867
HpaII CCGG 4 cut(s) 110, 234, 342, 1118
HphI GGTGA 2 cut(s) 986, 1178
Hpy166II GTNNAC 6 cut(s) 281, 304, 778, 808, 920, 1144
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 6 cut(s) 92, 326, 736, 997, 1132, 1207
Hpy8I GTNNAC 6 cut(s) 281, 304, 778, 808, 920, 1144
HpyAV CCTTC 2 cut(s) 54, 239
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4IV ACGT 2 cut(s) 954, 1103
HpyCH4V TGCA 4 cut(s) 267, 309, 599, 1259
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 689, 878
HpyF3I CTNAG 6 cut(s) 199, 447, 668, 1040, 1212, 1237
HpySE526I ACGT 2 cut(s) 954, 1103
Hsp92II CATG 7 cut(s) 260, 364, 769, 803, 917, 1153, 1210
KroI GCCGGC 1 cut(s) 1117
KroNI GCCGGC 1 cut(s) 1119
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 126, 770, 939
LmnI GCTCC 3 cut(s) 664, 886, 1231
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 230, 1139
MaeII ACGT 2 cut(s) 954, 1103
MaeIII GTNAC 4 cut(s) 521, 625, 754, 885
MalI GATC 4 cut(s) 96, 128, 772, 941
MboI GATC 4 cut(s) 94, 126, 770, 939
MboII GAAGA 4 cut(s) 39, 59, 202, 717
MhlI GDGCHC 2 cut(s) 669, 1236
MluCI AATT 4 cut(s) 140, 392, 580, 1173
MmeI TCCRAC 3 cut(s) 77, 204, 354
MroNI GCCGGC 1 cut(s) 1117
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 212, 351, 584, 695
MspI CCGG 4 cut(s) 110, 234, 342, 1118
MspR9I CCNGG 2 cut(s) 110, 342
MwoI GCNNNNNNNGC 3 cut(s) 515, 689, 878
NaeI GCCGGC 1 cut(s) 1119
NciI CCSGG 2 cut(s) 110, 342
NdeII GATC 4 cut(s) 94, 126, 770, 939
NgoMIV GCCGGC 1 cut(s) 1117
NlaIII CATG 7 cut(s) 260, 364, 769, 803, 917, 1153, 1210
NlaIV GGNNCC 2 cut(s) 857, 906
NmuCI GTSAC 2 cut(s) 521, 625
NspI RCATGY 1 cut(s) 260
PagI TCATGA 1 cut(s) 1206
PceI AGGCCT 3 cut(s) 692, 719, 1099
PciI ACATGT 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PdiI GCCGGC 1 cut(s) 1119
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 240, 867
PflMI CCANNNNNTGG 2 cut(s) 259, 914
PkrI GCNGC 3 cut(s) 511, 816, 840
Ppu21I YACGTR 2 cut(s) 955, 1104
PscI ACATGT 1 cut(s) 256
Psp124BI GAGCTC 2 cut(s) 669, 1236
PspEI GGTNACC 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 857, 906
RsaI GTAC 2 cut(s) 953, 1073
RsaNI GTAC 2 cut(s) 952, 1072
SacI GAGCTC 2 cut(s) 669, 1236
SaqAI TTAA 4 cut(s) 212, 351, 584, 695
SatI GCNGC 3 cut(s) 510, 815, 839
Sau3AI GATC 4 cut(s) 94, 126, 770, 939
ScrFI CCNGG 2 cut(s) 110, 342
SduI GDGCHC 2 cut(s) 669, 1236
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 4 cut(s) 140, 392, 580, 1173
SseBI AGGCCT 3 cut(s) 692, 719, 1099
SsiI CCGC 6 cut(s) 509, 516, 558, 814, 839, 929
SspMI CTAG 2 cut(s) 230, 1139
SstI GAGCTC 2 cut(s) 669, 1236
StuI AGGCCT 3 cut(s) 692, 719, 1099
StyD4I CCNGG 2 cut(s) 108, 340
StyI CCWWGG 3 cut(s) 400, 818, 900
TaaI ACNGT 1 cut(s) 549
TaiI ACGT 2 cut(s) 957, 1106
TaqI TCGA 4 cut(s) 243, 327, 825, 942
TasI AATT 4 cut(s) 140, 392, 580, 1173
TauI GCSGC 3 cut(s) 512, 817, 841
TfiI GAWTC 2 cut(s) 240, 867
Tru1I TTAA 4 cut(s) 212, 351, 584, 695
Tru9I TTAA 4 cut(s) 212, 351, 584, 695
TscAI CASTG 7 cut(s) 175, 455, 610, 652, 840, 1128, 1266
TseFI GTSAC 2 cut(s) 521, 625
Tsp45I GTSAC 2 cut(s) 521, 625
TspDTI ATGAA 6 cut(s) 17, 153, 541, 721, 788, 1138
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 7 cut(s) 175, 455, 610, 652, 840, 1128, 1266
Van91I CCANNNNNTGG 2 cut(s) 259, 914
XapI RAATTY 3 cut(s) 140, 392, 580
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 280, 919
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 230, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.