RLG00000029538

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000622
Physical Location & Seq
Reverse (-)
40066047 .. 40066528
482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029538

Sequence Viewer

Length: 408 bp
ATGAAGGTTGAGGTGATTGAGAGGGATTGCATCAAGCCTTCTTCTCCAACCCCAAGCCACCTTCGCAAACATGAGCTTTCATTTCTCGATCAAGTTGCCCCTCCCATTTTCATGCCCATGCTCCTATTCTACCCTGCTACTAATTATGGTCACGTTCTATCTGCTAGCTGGACGGATCATCGACAACGCCTTTATCGGACTGTAACGATGAAGGTACTCCTGTCGTACGAGTCAACTGCCAACTTTCAGATGTTGTATCCCAACCGGACCCAAACCAACTCAACAAGCTACTCCTATGTGAGTTGGAATGTGTTGTCGACTTTGTTCTTGCAGTCCAAGGGCCTCCAAGCCAACATCTTTGACTGTGGGGGCATGGCTATCGGAGTGTGCATTTCGCACAAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

9.07

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 47 1e-05 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AclWI GGATC 1 cut(s) 183
AfaI GTAC 2 cut(s) 216, 227
AluBI AGCT 3 cut(s) 76, 168, 288
AluI AGCT 3 cut(s) 76, 168, 288
AlwI GGATC 1 cut(s) 183
AoxI GGCC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 267, 340
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BcgI CGANNNNNNTGC 6 cut(s) 77, 111, 218, 252, 361, 395
BciVI GTATCC 1 cut(s) 267
BfaI CTAG 2 cut(s) 165, 406
BfuI GTATCC 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 267, 340
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 1 cut(s) 39
BmtI GCTAGC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 336
BshFI GGCC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 265
BsiWI CGTACG 1 cut(s) 225
BsnI GGCC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 88, 175
BspANI GGCC 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 88, 175
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 202, 365
BstC8I GCNNGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 91, 178
BstMBI GATC 2 cut(s) 88, 175
BstMWI GCNNNNNNNGC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 267, 340
Csp6I GTAC 2 cut(s) 215, 226
CviAII CATG 4 cut(s) 71, 112, 118, 373
CviJI RGCY 8 cut(s) 37, 57, 76, 168, 288, 342, 350, 377
CviKI_1 RGCY 8 cut(s) 37, 57, 76, 168, 288, 342, 350, 377
CviQI GTAC 2 cut(s) 215, 226
DpnI GATC 2 cut(s) 90, 177
DpnII GATC 2 cut(s) 88, 175
Eco130I CCWWGG 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 74, 115, 121, 376
FaiI YATR 6 cut(s) 72, 113, 119, 147, 297, 374
FatI CATG 4 cut(s) 70, 111, 117, 372
FblI GTMKAC 1 cut(s) 317
FspBI CTAG 2 cut(s) 165, 406
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 265
Hin1II CATG 4 cut(s) 74, 115, 121, 376
HincII GTYRAC 2 cut(s) 234, 318
HindII GTYRAC 2 cut(s) 234, 318
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 234, 318
Hpy188I TCNGA 3 cut(s) 198, 249, 383
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 234, 318
HpyAV CCTTC 3 cut(s) 48, 71, 205
HpyCH4III ACNGT 2 cut(s) 202, 365
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 30, 331, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 4 cut(s) 74, 115, 121, 376
Kzo9I GATC 2 cut(s) 88, 175
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 147, 154, 233, 278
LweI GCATC 1 cut(s) 39
MaeI CTAG 2 cut(s) 165, 406
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 149, 202
MalI GATC 2 cut(s) 90, 177
MboI GATC 2 cut(s) 88, 175
MboII GAAGA 1 cut(s) 33
MluCI AATT 1 cut(s) 142
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 71, 284
MnlI CCTC 4 cut(s) 4, 15, 111, 353
MslI CAYNNNNRTG 2 cut(s) 110, 116
MspI CCGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 2 cut(s) 88, 175
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 4 cut(s) 74, 115, 121, 376
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 149
Pfl23II CGTACG 1 cut(s) 225
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspLI CGTACG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 267, 340
RsaI GTAC 2 cut(s) 216, 227
RsaNI GTAC 2 cut(s) 215, 226
RseI CAYNNNNRTG 2 cut(s) 110, 116
SalI GTCGAC 1 cut(s) 316
Sau3AI GATC 2 cut(s) 88, 175
Sau96I GGNCC 2 cut(s) 267, 340
SchI GAGTC 1 cut(s) 239
SetI ASST 9 cut(s) 9, 15, 63, 78, 156, 170, 216, 290, 407
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 110, 116
Sse9I AATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 165, 406
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 202, 365
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 87, 181, 317
TasI AATT 1 cut(s) 142
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 17, 69, 100, 224
TspGWI ACGGA 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 2 cut(s) 165, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.