FvH4_5g33461

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000951
Physical Location & Seq
Forward (+)
24199664 .. 24200676
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33461.t1

Sequence Viewer

Length: 504 bp
ATGGCTGGAGAAGGAGTATTCTGTCACCAGTGTTGTCAAAGGACCACGAAACGTGTGTTCTTATGCACAAATGTCATGGGGAAACGTCACTGCGGCATCAAGATTTGCCAGTACAAGAAGATATCTGAGGAGGTGGCGGCTTCTAATGACTGGAAGTGCCCCAAATGTTGTGGGGATTGCATCTGCAGTGTGTGCTTGGCGCGACATGGATTAGAACCTATCAGTCGTATAGTGCATGAATCCAAGAAGCCTTTTAACAAGGAGACTCCGGAAGCGTCTAAGGCAAATGGAGAGGACAAAGACCAGAGGGAAGACGTTAAGGGCAAGACAAAGTCCAAGGCTCCTAGAGAGCCCCATAGAGTGAAAGCAAGGGAGGAAGTCCTTGAGGCTAAACTTCCTTTGCCTTTGGGGATGCCCTTGACAATTGTCGCTGGGACTGAACTACAATCTCAGAATGTTGGTCATGCTTTACAACTTTTAGAGTTCTGTGACGCCTTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

168

Amino Acids

18.6

Weight (kDa)

8.67

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 4 - 83 2e-10 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 202
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 2 cut(s) 93, 137
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 500
Alw26I GTCTC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 268
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 94, 138
BlsI GCNGC 2 cut(s) 95, 139
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 3 cut(s) 105, 189, 402
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 28, 109, 155
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 417
BseMII CTCAG 2 cut(s) 117, 464
BseNI ACTGG 3 cut(s) 28, 109, 155
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 161, 354
Bsp13I TCCGGA 1 cut(s) 268
BspACI CCGC 2 cut(s) 93, 137
BspCNI CTCAG 2 cut(s) 118, 463
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 28, 109, 155
BssECI CCNNGG 1 cut(s) 336
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 492
BstAPI GCANNNNNTGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 126, 279, 450
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 257
BstMWI GCNNNNNNNGC 2 cut(s) 192, 281
BstPAI GACNNNNGTC 1 cut(s) 425
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 417
BtsI GCAGTG 2 cut(s) 88, 193
BtsIMutI CAGTG 3 cut(s) 35, 88, 193
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 4 cut(s) 76, 206, 236, 464
CviJI RGCY 6 cut(s) 5, 140, 250, 341, 352, 389
CviKI_1 RGCY 6 cut(s) 5, 140, 250, 341, 352, 389
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 3 cut(s) 126, 279, 450
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 354
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 42
EcoRV GATATC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 79, 209, 239, 467
FaiI YATR 7 cut(s) 64, 77, 207, 230, 237, 357, 465
FaqI GGGAC 1 cut(s) 448
FatI CATG 4 cut(s) 75, 205, 235, 463
Fnu4HI GCNGC 2 cut(s) 94, 138
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 94, 138
FspBI CTAG 1 cut(s) 345
GlaI GCGC 1 cut(s) 201
GluI GCNGC 2 cut(s) 94, 138
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 27
HapII CCGG 1 cut(s) 269
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 79, 209, 239, 467
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 2 cut(s) 239, 265
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 127, 453
Hpy188III TCNNGA 2 cut(s) 100, 269
HpyAV CCTTC 1 cut(s) 5
HpyCH4IV ACGT 3 cut(s) 52, 85, 315
HpyCH4V TGCA 4 cut(s) 66, 180, 186, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 281
HpyF3I CTNAG 3 cut(s) 126, 279, 450
HpySE526I ACGT 3 cut(s) 52, 85, 315
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 79, 209, 239, 467
HspAI GCGC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 268
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 41, 122, 136, 282, 317, 417
LweI GCATC 3 cut(s) 105, 189, 402
MaeI CTAG 1 cut(s) 345
MaeII ACGT 3 cut(s) 52, 85, 315
MaeIII GTNAC 3 cut(s) 23, 86, 488
MboII GAAGA 2 cut(s) 130, 323
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 2 cut(s) 161, 354
MluCI AATT 1 cut(s) 423
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 6 cut(s) 121, 124, 286, 300, 367, 379
MroI TCCGGA 1 cut(s) 268
MseI TTAA 2 cut(s) 255, 318
MspI CCGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 423
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 192, 281
NlaIII CATG 4 cut(s) 79, 209, 239, 467
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 3 cut(s) 23, 86, 488
PfeI GAWTC 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 95, 139
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PshAI GACNNNNGTC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 188
PsyI GACNNNGTC 1 cut(s) 331
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 255, 318
SatI GCNGC 2 cut(s) 94, 138
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 2 cut(s) 161, 354
SetI ASST 5 cut(s) 55, 88, 135, 220, 318
SfaNI GCATC 3 cut(s) 105, 189, 402
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 423
SsiI CCGC 2 cut(s) 93, 137
SspMI CTAG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 3 cut(s) 55, 88, 318
TasI AATT 1 cut(s) 423
TatI WGTACW 1 cut(s) 111
TauI GCSGC 2 cut(s) 96, 140
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 255, 318
Tru9I TTAA 2 cut(s) 255, 318
TscAI CASTG 3 cut(s) 35, 95, 193
TseFI GTSAC 3 cut(s) 23, 86, 488
Tsp45I GTSAC 3 cut(s) 23, 86, 488
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 3 cut(s) 35, 95, 193
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 42
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.