RLG00000021019

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000951
Physical Location & Seq
Reverse (-)
71117464 .. 71120661
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021019

Sequence Viewer

Length: 1326 bp
ATGGCCGGAGAAGGAGTATTCTGTCACCAGTGCCGCCAAAGGACCACGAAACGTGTGTTCTTGTGCAACAATGTCATGGGGAAACGCCAATGCAAGATCAAGATCTGCGAGCGGTGCCCCAAGAAAAGATATGTAGATATTACAGAAGAGGCGGCTGCTTCAGATGATTTGAAGTGTCCGAAATGCTGCGGGATCTGCAACTGCAGTGTGTGCATGAAGCGAGAGGGTAAAGAACCTCTTGGTCGAGCTGTGCCTGACTCAGAGAATCCTTCAGAGGACCCTGCGGGAGTGTCTGAGCCAAATAGAGAGGAAGAAAACCAAATAGAAGATGTTGGCAAGGGCAAGAGGAAGGCCAAGGCTCCTAGGGAACCTCGCAGAGTGAAGGCAAAGGAGGAAGTAGTTGAGCCTGAACTTCCTCTGCCTTTGGGGGTTCCCTTAACAACTGTTGCGGCCATTGAACTACATCCTCAGGATGTAGGACATGCCCCTACAGTTTATAGAGTTCTGTTAGTCCGATTCCAGGCCAAACTCCTGTCTGAGATACAGAAGACGGGGGACGTAAAAGAGCCTTTGAACGAAAACTCTTGGTCCGAACATTTGAGGAGCTACTTCTCTGAGTCTCAACTCCTACTGAGGGAACTGCCCTCAGATTTCTTTAGTAGAGGAGTTGAGGGGTATGACTCCTTGGACTTCTCCCAGAAGCTTAGAGTCCTAACTTTCCTTTGTGATGAGGCCCTTGGCACCAAATCACTGAGCAATTTCATAGAAAGCCAAAAAGAAATATTCTCTAAAAGTAAGATCGCAGCAAAACGAAAAGTATCTGCTGCGAAGGCTAAGCAGAGGTGGCCAAGGCTTGGCAGTTACTGTTACTGCAGGAGACAATGCTGCTTGACTGCTTCAACTTCTTCAGATCACAAATCTACTGTTTCCCGACTGAAGAGTGAAGCAACTGAAGATCATGCAGAGTTGCTTGAAGCAAAAGCCTTGAAATCAAAGCCTTATCTGTTCGATGCTGATGGCCGTGCATTTTGGAGATTGACAGGCTATGGTGATGGACATGATGTGCTGCTTCAAGATGTAGGAACTTGGGATCCATTTACATATTCTGATGAAAAATGGTTCCAGTACGGGGCAGAAAAGAAAGAAGCAGTTGAAAAATACTGCTCCTGTAAGGTATGCACATTCAATTGTCTTATGACAAGAGGCCTTATGTCTGAAACCCTGTGTCAAACACTTCCTTCTGGAAGTAAGGAAGAAGAGAAGCTTGAAAATGCGACTACTGGAAGCAGAGAAGAAGACATACCCAAAAGTAGTGCAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

442

Amino Acids

49.65

Weight (kDa)

7.71

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 4 - 84 3.1e-17 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 114, 740
AccB7I CCANNNNNTGG 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 6 cut(s) 34, 112, 152, 189, 284, 449
AclWI GGATC 3 cut(s) 200, 1085, 1098
AcoI YGGCCR 4 cut(s) 3, 450, 845, 1018
AcuI CTGAAG 5 cut(s) 144, 255, 891, 956, 972
AfaI GTAC 1 cut(s) 1127
AfiI CCNNNNNNNGG 4 cut(s) 520, 634, 854, 1129
AflIII ACRYGT 1 cut(s) 52
AjnI CCWGG 1 cut(s) 519
AloI GAACNNNNNNTCC 2 cut(s) 1075, 1107
AluBI AGCT 4 cut(s) 248, 606, 703, 1264
AluI AGCT 4 cut(s) 248, 606, 703, 1264
Alw26I GTCTC 2 cut(s) 624, 871
AlwI GGATC 3 cut(s) 200, 1085, 1098
AlwNI CAGNNNCTG 1 cut(s) 864
AoxI GGCC 8 cut(s) 3, 351, 450, 522, 732, 845, 1018, 1204
ApeKI GCWGC 6 cut(s) 155, 186, 803, 824, 885, 1066
AspA2I CCTAGG 1 cut(s) 362
AspS9I GGNCC 4 cut(s) 42, 277, 588, 733
AsuHPI GGTGA 2 cut(s) 17, 1061
AvaII GGWCC 3 cut(s) 42, 277, 588
AvrII CCTAGG 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 847
BamHI GGATCC 1 cut(s) 1090
BanI GGYRCC 2 cut(s) 114, 740
BarI GAAGNNNNNNTAC 2 cut(s) 1284, 1316
BbsI GAAGAC 2 cut(s) 554, 1302
BbvI GCAGC 6 cut(s) 142, 173, 811, 815, 872, 1053
BccI CCATC 2 cut(s) 1010, 1046
BceAI ACGGC 1 cut(s) 1005
BciT130I CCWGG 1 cut(s) 521
BcoDI GTCTC 2 cut(s) 624, 871
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 3 cut(s) 202, 489, 871
BglII AGATCT 1 cut(s) 102
BisI GCNGC 9 cut(s) 34, 153, 156, 187, 450, 804, 825, 886, 1067
BlnI CCTAGG 1 cut(s) 362
BlpI GCTNAGC 1 cut(s) 834
BlsI GCNGC 9 cut(s) 35, 154, 157, 188, 451, 805, 826, 887, 1068
Bme1390I CCNGG 1 cut(s) 521
Bme18I GGWCC 3 cut(s) 42, 277, 588
BmgT120I GGNCC 4 cut(s) 42, 277, 588, 733
BmiI GGNNCC 8 cut(s) 116, 279, 360, 369, 432, 742, 1092, 1121
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 1 cut(s) 1000
BpiI GAAGAC 2 cut(s) 554, 1302
Bpu1102I GCTNAGC 1 cut(s) 834
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 354, 362, 684, 736, 848
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 4 cut(s) 520, 634, 854, 1129
Bse1I ACTGG 3 cut(s) 28, 1123, 1285
Bse21I CCTNAGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 5 cut(s) 354, 362, 684, 736, 848
BseGI GGATG 2 cut(s) 463, 478
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 4 cut(s) 520, 634, 854, 1129
BseMII CTCAG 8 cut(s) 273, 285, 482, 528, 606, 623, 660, 743
BseNI ACTGG 3 cut(s) 28, 1123, 1285
BseRI GAGGAG 2 cut(s) 616, 678
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 6 cut(s) 142, 173, 811, 815, 872, 1053
BshFI GGCC 8 cut(s) 5, 353, 452, 524, 734, 847, 1020, 1206
BshNI GGYRCC 2 cut(s) 114, 740
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 4 cut(s) 520, 634, 854, 1129
BsmAI GTCTC 2 cut(s) 624, 871
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 8 cut(s) 5, 353, 452, 524, 734, 847, 1020, 1206
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
Bsp1720I GCTNAGC 1 cut(s) 834
BspACI CCGC 6 cut(s) 34, 112, 152, 189, 284, 449
BspANI GGCC 8 cut(s) 5, 353, 452, 524, 734, 847, 1020, 1206
BspCNI CTCAG 8 cut(s) 272, 286, 481, 529, 607, 624, 659, 744
BspLI GGNNCC 8 cut(s) 116, 279, 360, 369, 432, 742, 1092, 1121
BspMAI CTGCAG 2 cut(s) 206, 875
BspPI GGATC 3 cut(s) 200, 1085, 1098
BspT107I GGYRCC 2 cut(s) 114, 740
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 3 cut(s) 28, 1123, 1285
BssECI CCNNGG 5 cut(s) 354, 362, 684, 736, 848
BssMI GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
BssT1I CCWWGG 5 cut(s) 354, 362, 684, 736, 848
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 4 cut(s) 445, 493, 866, 925
Bst6I CTCTTC 4 cut(s) 141, 932, 1251, 1314
BstAPI GCANNNNNTGC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 110
BstF5I GGATG 2 cut(s) 463, 478
BstKTI GATC 7 cut(s) 99, 105, 195, 801, 913, 958, 1093
BstMAI GTCTC 2 cut(s) 624, 871
BstMBI GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
BstMWI GCNNNNNNNGC 5 cut(s) 114, 195, 210, 830, 844
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 3 cut(s) 202, 489, 871
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 6 cut(s) 142, 173, 811, 815, 872, 1053
BstV2I GAAGAC 2 cut(s) 554, 1302
BstX2I RGATCY 3 cut(s) 102, 192, 1090
BstYI RGATCY 3 cut(s) 102, 192, 1090
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 8 cut(s) 5, 353, 452, 524, 734, 847, 1020, 1206
BtsCI GGATG 2 cut(s) 463, 478
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 35, 211, 749
Cac8I GCNNGC 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 864
Cfr13I GGNCC 4 cut(s) 42, 277, 588, 733
Csp6I GTAC 1 cut(s) 1126
CviAII CATG 5 cut(s) 76, 214, 482, 959, 1058
CviQI GTAC 1 cut(s) 1126
DpnI GATC 7 cut(s) 98, 104, 194, 800, 912, 957, 1092
DpnII GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
EaeI YGGCCR 4 cut(s) 3, 450, 845, 1018
Eam1104I CTCTTC 4 cut(s) 141, 932, 1251, 1314
EarI CTCTTC 4 cut(s) 141, 932, 1251, 1314
Eco130I CCWWGG 5 cut(s) 354, 362, 684, 736, 848
Eco147I AGGCCT 1 cut(s) 1206
Eco47I GGWCC 3 cut(s) 42, 277, 588
Eco57I CTGAAG 5 cut(s) 144, 255, 891, 956, 972
Eco81I CCTNAGG 1 cut(s) 468
EcoO109I RGGNCCY 2 cut(s) 277, 733
EcoRII CCWGG 1 cut(s) 519
EcoT14I CCWWGG 5 cut(s) 354, 362, 684, 736, 848
ErhI CCWWGG 5 cut(s) 354, 362, 684, 736, 848
FaeI CATG 5 cut(s) 79, 217, 485, 962, 1061
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 1248, 1280
FaqI GGGAC 1 cut(s) 569
FatI CATG 5 cut(s) 75, 213, 481, 958, 1057
FauI CCCGC 2 cut(s) 182, 277
Fnu4HI GCNGC 9 cut(s) 34, 153, 156, 187, 450, 804, 825, 886, 1067
FokI GGATG 2 cut(s) 450, 485
Fsp4HI GCNGC 9 cut(s) 34, 153, 156, 187, 450, 804, 825, 886, 1067
FspBI CTAG 1 cut(s) 363
GluI GCNGC 9 cut(s) 34, 153, 156, 187, 450, 804, 825, 886, 1067
HaeIII GGCC 8 cut(s) 5, 353, 452, 524, 734, 847, 1020, 1206
HapII CCGG 1 cut(s) 6
Hin1II CATG 5 cut(s) 79, 217, 485, 962, 1061
HindIII AAGCTT 2 cut(s) 701, 1262
HinfI GANTC 6 cut(s) 257, 265, 516, 617, 680, 708
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 17, 1061
Hpy188III TCNNGA 5 cut(s) 100, 470, 930, 1073, 1242
HpyAV CCTTC 6 cut(s) 5, 279, 343, 376, 823, 1248
HpyCH4III ACNGT 4 cut(s) 445, 493, 866, 925
HpyCH4IV ACGT 2 cut(s) 52, 558
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 195, 210, 830, 844
HpySE526I ACGT 2 cut(s) 52, 558
Hsp92II CATG 5 cut(s) 79, 217, 485, 962, 1061
Kzo9I GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
LmnI GCTCC 3 cut(s) 364, 603, 1169
Lsp1109I GCAGC 6 cut(s) 142, 173, 811, 815, 872, 1053
LweI GCATC 1 cut(s) 1000
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 52, 558
MaeIII GTNAC 3 cut(s) 23, 860, 866
MalI GATC 7 cut(s) 98, 104, 194, 800, 912, 957, 1092
MbiI CCGCTC 1 cut(s) 112
MboI GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
MfeI CAATTG 1 cut(s) 1186
MflI RGATCY 3 cut(s) 102, 192, 1090
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 847
MluCI AATT 2 cut(s) 757, 1186
MluNI TGGCCA 1 cut(s) 847
MlyI GAGTC 4 cut(s) 251, 626, 674, 717
Mox20I TGGCCA 1 cut(s) 847
MscI TGGCCA 1 cut(s) 847
MseI TTAA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 847
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 1186
MvaI CCWGG 1 cut(s) 521
MwoI GCNNNNNNNGC 5 cut(s) 114, 195, 210, 830, 844
NdeII GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
NlaIII CATG 5 cut(s) 79, 217, 485, 962, 1061
NlaIV GGNNCC 8 cut(s) 116, 279, 360, 369, 432, 742, 1092, 1121
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 485
PceI AGGCCT 1 cut(s) 1206
PfeI GAWTC 2 cut(s) 265, 516
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 9 cut(s) 35, 154, 157, 188, 451, 805, 826, 887, 1068
PleI GAGTC 4 cut(s) 251, 625, 674, 716
PpsI GAGTC 4 cut(s) 251, 625, 674, 716
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 8 cut(s) 116, 279, 360, 369, 432, 742, 1092, 1121
PspPI GGNCC 4 cut(s) 42, 277, 588, 733
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 2 cut(s) 206, 875
PstNI CAGNNNCTG 1 cut(s) 864
PsuI RGATCY 3 cut(s) 102, 192, 1090
RsaI GTAC 1 cut(s) 1127
RsaNI GTAC 1 cut(s) 1126
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 9 cut(s) 34, 153, 156, 187, 450, 804, 825, 886, 1067
Sau3AI GATC 7 cut(s) 96, 102, 192, 798, 910, 955, 1090
Sau96I GGNCC 4 cut(s) 42, 277, 588, 733
SchI GAGTC 4 cut(s) 251, 626, 674, 717
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 1000
SfcI CTRYAG 3 cut(s) 202, 489, 871
SinI GGWCC 3 cut(s) 42, 277, 588
Sse9I AATT 2 cut(s) 757, 1186
SseBI AGGCCT 1 cut(s) 1206
SsiI CCGC 6 cut(s) 34, 112, 152, 189, 284, 449
SspI AATATT 1 cut(s) 783
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 1206
StyD4I CCNGG 1 cut(s) 519
StyI CCWWGG 5 cut(s) 354, 362, 684, 736, 848
TaaI ACNGT 4 cut(s) 445, 493, 866, 925
TaiI ACGT 2 cut(s) 55, 561
TaqI TCGA 2 cut(s) 244, 1008
TasI AATT 2 cut(s) 757, 1186
TauI GCSGC 3 cut(s) 36, 155, 452
TfiI GAWTC 2 cut(s) 265, 516
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 3 cut(s) 35, 211, 756
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 6 cut(s) 155, 186, 803, 824, 885, 1066
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 230, 751, 1125
TspRI CASTG 3 cut(s) 35, 211, 756
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 3 cut(s) 42, 277, 588
XceI RCATGY 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 362
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.