RLG00000001363

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000951
Physical Location & Seq
Forward (+)
14698043 .. 14698690
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001363

Sequence Viewer

Length: 333 bp
ATGTCTTATTCTACATCTGGGGAGCAACATGATCACTTGGCTACCCCACCTCCACCACCCCTAGTATCGCCGCAATCCTCATCGCCGATTTGTTTCCGATTGCCGCGCAGAGCCGCCCCAAAATCCAAAATGGGCTCTGTCGATGACATCGCGGTTAATCTCAATAGGGTTCTTGCCCTGCTAGACTCGGAGTTTGTGCTTGAGGCTCTGAGGAGAGAACGCCAAGAATTTTCGGAGGAGTTGCAGCGCCGCAAAATTCGCACTTTAATGTCTATGCGCAAGGGCTCCAAGGCTGAGCCAAAAAAGAAGATGGCCAACAAAAATAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.47

Weight (kDa)

10.33

Isoelectric Point (pI)

85.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
AccII CGCG 2 cut(s) 106, 152
AciI CCGC 5 cut(s) 71, 104, 114, 152, 250
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 2 cut(s) 227, 255
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 2 cut(s) 227, 255
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspLEI GCGC 3 cut(s) 108, 249, 279
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 2 cut(s) 137, 287
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 304
BclI TGATCA 1 cut(s) 31
BfaI CTAG 2 cut(s) 62, 182
BfoI RGCGCY 1 cut(s) 250
BisI GCNGC 5 cut(s) 71, 104, 114, 245, 250
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 5 cut(s) 72, 105, 115, 246, 251
BmiI GGNNCC 1 cut(s) 286
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
BseDI CCNNGG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 200, 285
BseRI GAGGAG 2 cut(s) 226, 251
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 2 cut(s) 106, 152
BshFI GGCC 1 cut(s) 314
BsnI GGCC 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 137, 287
Bsp143I GATC 1 cut(s) 31
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 5 cut(s) 71, 104, 114, 152, 250
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 201, 286
BspFNI CGCG 2 cut(s) 106, 152
BspLI GGNNCC 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 209, 294
BstFNI CGCG 2 cut(s) 106, 152
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 3 cut(s) 108, 249, 279
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstUI CGCG 2 cut(s) 106, 152
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 314
BtgZI GCGATG 2 cut(s) 66, 133
CfoI GCGC 3 cut(s) 108, 249, 279
CviAII CATG 1 cut(s) 29
CviJI RGCY 8 cut(s) 41, 113, 135, 206, 285, 293, 298, 314
CviKI_1 RGCY 8 cut(s) 41, 113, 135, 206, 285, 293, 298, 314
DdeI CTNAG 2 cut(s) 209, 294
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 2 cut(s) 137, 287
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 137, 287
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 30, 275
FatI CATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 5 cut(s) 71, 104, 114, 245, 250
FriOI GRGCYC 2 cut(s) 137, 287
Fsp4HI GCNGC 5 cut(s) 71, 104, 114, 245, 250
FspBI CTAG 2 cut(s) 62, 182
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 3 cut(s) 107, 248, 278
GluI GCNGC 5 cut(s) 71, 104, 114, 245, 250
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 1 cut(s) 314
HhaI GCGC 3 cut(s) 108, 249, 279
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 3 cut(s) 106, 247, 277
HinP1I GCGC 3 cut(s) 106, 247, 277
HinfI GANTC 1 cut(s) 185
Hpy188I TCNGA 4 cut(s) 98, 190, 210, 235
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 2 cut(s) 209, 294
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 3 cut(s) 106, 247, 277
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 2 cut(s) 22, 290
LpnPI CCDG 2 cut(s) 3, 191
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 2 cut(s) 62, 182
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 137, 287
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 2 cut(s) 227, 255
MluNI TGGCCA 1 cut(s) 314
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 5 cut(s) 60, 88, 196, 204, 229
Mox20I TGGCCA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 314
MseI TTAA 2 cut(s) 156, 266
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 314
MvnI CGCG 2 cut(s) 106, 152
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 278
PkrI GCNGC 5 cut(s) 72, 105, 115, 246, 251
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 156, 266
SatI GCNGC 5 cut(s) 71, 104, 114, 245, 250
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 2 cut(s) 137, 287
SetI ASST 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 227, 255
SsiI CCGC 5 cut(s) 71, 104, 114, 152, 250
SspMI CTAG 2 cut(s) 62, 182
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 227, 255
TauI GCSGC 4 cut(s) 73, 106, 116, 252
Tru1I TTAA 2 cut(s) 156, 266
Tru9I TTAA 2 cut(s) 156, 266
TseI GCWGC 1 cut(s) 244
XapI RAATTY 2 cut(s) 227, 255
XspI CTAG 2 cut(s) 62, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.