Rorug07G0290500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000951
Physical Location & Seq
Forward (+)
28307713 .. 28308848
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0290500.1

Sequence Viewer

Length: 735 bp
ATGACAAGTTATTGTCTATATGCAGAGGTTAGTAATATCTACAAGTCTGTGAATATGGCAGAACCATCCAAGGTGAAATCTTCCTCTGCCGATCAAAAGAAAAAAAGCTCATTTCTAGATGAGGAAATTGGTGACGATTTCCTCAGCTCCTGGAAATCCATGTCAGTAATGAAAGATGACGGGATGGATTTCAGCCTTGATACAGGGGCCAAAAGCAAGAAGAAAGTGTTTGACTTTGATAAGCTGGATATGGATTTCAATCTAGATGGTGACTTCGACAAGATATCATCTTTCAAAATGGACATGTCTGATTTCGACTTCTCAATCCCCCCCCCCCCCCCCCCAAAAAAAAAGATGCAAAAACCAAGGAAGTTGACATGTCAGACCTTGATTTATCAAGCCCTCCCAAAAAAGCTGCAAAAACCAAGGAAAGATCCGAAGAAGAACCCTCCGGAGGAAGCCGTCAAGGGAAACAAGACACATTTAAATTCTCCTTTGATTTCAATGATTAAATGTAATATACTGTGTTACAACAAGTTACCTGAACTATTTCATCTTGTAAGTAGGTTGGATAGTTTTGATCTCGATTCAACTTTGTTGAAACGAGAAAAGAGTTCTAAAAAGAACCAAGATAGCAGCAAAGAGGTTGTCTATGATGGAGCTGGGTGTGGAGGCTCTAAAGTCGACCTAGCTGAAGGGATTAGTACACCACATCAAAGATTAATACTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.52

Weight (kDa)

8.82

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 451
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 1 cut(s) 454
AflIII ACRYGT 2 cut(s) 303, 377
AgsI TTSAA 5 cut(s) 259, 295, 504, 591, 601
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 6 cut(s) 108, 147, 244, 415, 662, 692
AluI AGCT 6 cut(s) 108, 147, 244, 415, 662, 692
AlwI GGATC 1 cut(s) 428
AlwNI CAGNNNCTG 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 415, 636
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AseI ATTAAT 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 549
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 85, 143, 281
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 402, 648
BccI CCATC 4 cut(s) 73, 178, 260, 650
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 151
BfaI CTAG 3 cut(s) 116, 263, 689
BisI GCNGC 2 cut(s) 416, 637
BlsI GCNGC 2 cut(s) 417, 638
Bme1390I CCNGG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 69, 365, 425
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 69, 365, 425
BseGI GGATG 2 cut(s) 65, 189
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 402, 648
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 454
BsnI GGCC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 3 cut(s) 91, 433, 580
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 156
BspEI TCCGGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 69, 365, 425
BssMI GATC 3 cut(s) 91, 433, 580
BssT1I CCWWGG 3 cut(s) 69, 365, 425
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 525
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 2 cut(s) 65, 189
BstKTI GATC 3 cut(s) 94, 436, 583
BstMBI GATC 3 cut(s) 91, 433, 580
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 2 cut(s) 307, 381
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 402, 648
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 65, 189
CaiI CAGNNNCTG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 705
CviAII CATG 3 cut(s) 160, 304, 378
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 93, 435, 582
DpnII GATC 3 cut(s) 91, 433, 580
DraI TTTAAA 1 cut(s) 486
Eco130I CCWWGG 3 cut(s) 69, 365, 425
Eco32I GATATC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 69, 365, 425
ErhI CCWWGG 3 cut(s) 69, 365, 425
FaeI CATG 3 cut(s) 163, 307, 381
FaiI YATR 9 cut(s) 19, 21, 56, 161, 251, 305, 379, 521, 654
FatI CATG 3 cut(s) 159, 303, 377
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 2 cut(s) 416, 637
FokI GGATG 2 cut(s) 52, 196
Fsp4HI GCNGC 2 cut(s) 416, 637
FspBI CTAG 3 cut(s) 116, 263, 689
GluI GCNGC 2 cut(s) 416, 637
GsaI CCCAGC 1 cut(s) 666
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 452
Hin1II CATG 3 cut(s) 163, 307, 381
HincII GTYRAC 2 cut(s) 375, 685
HindII GTYRAC 2 cut(s) 375, 685
HinfI GANTC 1 cut(s) 587
HpaII CCGG 1 cut(s) 452
HphI GGTGA 3 cut(s) 85, 143, 281
Hpy166II GTNNAC 3 cut(s) 375, 685, 707
Hpy188I TCNGA 3 cut(s) 310, 384, 438
Hpy188III TCNNGA 4 cut(s) 116, 263, 452, 584
Hpy8I GTNNAC 3 cut(s) 375, 685, 707
HpyAV CCTTC 1 cut(s) 689
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4V TGCA 3 cut(s) 23, 358, 418
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 3 cut(s) 163, 307, 381
Kpn2I TCCGGA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 91, 433, 580
LmnI GCTCC 2 cut(s) 152, 659
LpnPI CCDG 7 cut(s) 136, 163, 189, 230, 465, 555, 648
Lsp1109I GCAGC 2 cut(s) 402, 648
LweI GCATC 1 cut(s) 345
MaeI CTAG 3 cut(s) 116, 263, 689
MaeIII GTNAC 4 cut(s) 131, 269, 527, 537
MalI GATC 3 cut(s) 93, 435, 582
MboI GATC 3 cut(s) 91, 433, 580
MboII GAAGA 4 cut(s) 72, 232, 451, 454
MflI RGATCY 1 cut(s) 433
MluCI AATT 2 cut(s) 126, 487
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 9 cut(s) 19, 94, 115, 152, 413, 448, 459, 637, 665
MroI TCCGGA 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 3 cut(s) 485, 510, 722
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeII GATC 3 cut(s) 91, 433, 580
NlaIII CATG 3 cut(s) 163, 307, 381
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 131, 269
NspI RCATGY 2 cut(s) 307, 381
PciI ACATGT 2 cut(s) 303, 377
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 587
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 2 cut(s) 417, 638
PscI ACATGT 2 cut(s) 303, 377
PshBI ATTAAT 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 150
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
SalI GTCGAC 1 cut(s) 683
SaqAI TTAA 3 cut(s) 485, 510, 722
SatI GCNGC 2 cut(s) 416, 637
Sau3AI GATC 3 cut(s) 91, 433, 580
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 151
SfaNI GCATC 1 cut(s) 345
SmiI ATTTAAAT 1 cut(s) 486
Sse9I AATT 2 cut(s) 126, 487
SspMI CTAG 3 cut(s) 116, 263, 689
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 3 cut(s) 69, 365, 425
SwaI ATTTAAAT 1 cut(s) 486
TaaI ACNGT 1 cut(s) 525
TaqI TCGA 4 cut(s) 276, 315, 585, 684
TasI AATT 2 cut(s) 126, 487
TatI WGTACW 1 cut(s) 704
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 3 cut(s) 485, 510, 722
Tru9I TTAA 3 cut(s) 485, 510, 722
TseFI GTSAC 2 cut(s) 131, 269
TseI GCWGC 2 cut(s) 415, 636
Tsp45I GTSAC 2 cut(s) 131, 269
TspDTI ATGAA 2 cut(s) 185, 542
VspI ATTAAT 1 cut(s) 722
XapI RAATTY 1 cut(s) 487
XbaI TCTAGA 2 cut(s) 115, 262
XceI RCATGY 2 cut(s) 307, 381
XmiI GTMKAC 1 cut(s) 684
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 3 cut(s) 116, 263, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.