Rh1BG149400

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000951
Physical Location & Seq
Reverse (-)
24365338 .. 24367401
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG149400.1

Sequence Viewer

Length: 951 bp
ATGAGGAAACGCCAATGCAAGATCAAGATCTGCGAGCGATGCCTCAAGAAAAGATATGTAGATATCATAGAAGAGGCGGCTGCTTCAGATGATTGGAAGTGTCCGAAATGCTGCGGGATCTGCAACTGCAGTGTGTGCATGAAGCGAGAGGGTAAAGAACCTCTTGGTCGAGTTGTGCCTGACTCAGAGAAGCCTTCAGAGGAGGACCCTGCGGAAGTGGCTGAGCCAAATGAAGAAGAAGAAAACCATAGAGAAGATGTTGGCAAGGGCAAGTGGAAGGCCAAGGCTCCGAGGGAACCCCGCAGAGTGAAGGCGAAGGAAGAAGTAGTTGAGCCGGAACTTCCTCTACCTTTTGGGGTTCCCTTAACAACTGTTGCGGGCATTGAACTACATCCTCAGGATGTAGGACATGCCCTACAGTTTATAGACTTCTGTGTGTCCCTTGAAGAGGTTCTTAAGTTCAGCAAAGAAGACGCTGAATCTCTTCTCAGAGACCTAATGCATCAACAATACTCCTCAGTATTTCGATTCCAGGTCAAACTTCTGTCTGAGATACAGAAGACAGGAGACGTAAAAGAAGGAGTTGAGGGGTATGACTCTTTGGACTTCTCCCAGAAGCTTAGAGTCCTAACTTTCCTTTGTGATGAGGCTCTTGACACCATATCACTGAGCAAATTCATAGAAAGCCAAAAAGACATATTCCATCGAAGCAAGATCACAGCAAAACGAACAGTATCTGCTGCGAAGGCTAAGGAGATAAGTATCAAGCAGCAGTTGAAAGCAGAGGTGGCCAAGGCCAAGGCAATTACTGCAGGAGACAATGCTGCTTCAACTTCTTCAGATCACGAATCTACTGTTTCGCGACTGAAGAGTGAAGCAGCTCAAGCTCATGCAGAGTTGCTTGAAGCAAAATCCTTGAAATCAAGGATGATACCACATGATTCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

316

Amino Acids

35.43

Weight (kDa)

6.3

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 4 - 61 3.2e-16 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 862
AciI CCGC 5 cut(s) 77, 114, 212, 301, 377
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 4 cut(s) 69, 180, 822, 887
AfiI CCNNNNNNNGG 1 cut(s) 448
AflII CTTAAG 1 cut(s) 455
AgsI TTSAA 6 cut(s) 386, 446, 778, 831, 905, 919
AjnI CCWGG 1 cut(s) 531
AluBI AGCT 3 cut(s) 619, 881, 887
AluI AGCT 3 cut(s) 619, 881, 887
Alw26I GTCTC 3 cut(s) 486, 561, 810
AlwI GGATC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 737
AoxI GGCC 3 cut(s) 279, 789, 795
ApeKI GCWGC 6 cut(s) 80, 111, 740, 769, 824, 878
ApoI RAATTY 1 cut(s) 674
Asp700I GAANNNNTTC 2 cut(s) 450, 483
AspS9I GGNCC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 396
BalI TGGCCA 1 cut(s) 791
BbsI GAAGAC 2 cut(s) 477, 566
BbvI GCAGC 6 cut(s) 67, 98, 727, 781, 811, 890
BccI CCATC 1 cut(s) 711
BciT130I CCWGG 1 cut(s) 533
BcoDI GTCTC 3 cut(s) 486, 561, 810
BfmI CTRYAG 3 cut(s) 127, 416, 810
BfrI CTTAAG 1 cut(s) 455
BglII AGATCT 1 cut(s) 27
BisI GCNGC 7 cut(s) 78, 81, 112, 741, 770, 825, 879
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 7 cut(s) 79, 82, 113, 742, 771, 826, 880
Bme1390I CCNGG 1 cut(s) 533
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 207, 288, 297, 360
BmrFI CCNGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 29, 511
BpiI GAAGAC 2 cut(s) 477, 566
Bpu10I CCTNAGC 1 cut(s) 750
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 29, 867
BsaBI GATNNNNATC 2 cut(s) 26, 761
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 4 cut(s) 282, 290, 792, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse21I CCTNAGG 1 cut(s) 396
Bse8I GATNNNNATC 2 cut(s) 26, 761
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 4 cut(s) 282, 290, 792, 798
BseGI GGATG 3 cut(s) 391, 406, 933
BseJI GATNNNNATC 2 cut(s) 26, 761
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 7 cut(s) 198, 213, 410, 502, 531, 540, 659
BseRI GAGGAG 2 cut(s) 215, 505
BseXI GCAGC 6 cut(s) 67, 98, 727, 781, 811, 890
Bsh1236I CGCG 1 cut(s) 862
BshFI GGCC 3 cut(s) 281, 791, 797
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 3 cut(s) 486, 561, 810
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 3 cut(s) 281, 791, 797
Bso31I GGTCTC 1 cut(s) 486
Bsp143I GATC 5 cut(s) 21, 27, 117, 714, 841
Bsp1720I GCTNAGC 1 cut(s) 222
Bsp68I TCGCGA 1 cut(s) 862
BspACI CCGC 5 cut(s) 77, 114, 212, 301, 377
BspANI GGCC 3 cut(s) 281, 791, 797
BspCNI CTCAG 7 cut(s) 197, 214, 409, 501, 530, 541, 660
BspFNI CGCG 1 cut(s) 862
BspLI GGNNCC 4 cut(s) 207, 288, 297, 360
BspMAI CTGCAG 2 cut(s) 131, 814
BspPI GGATC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 486
BssECI CCNNGG 4 cut(s) 282, 290, 792, 798
BssMI GATC 5 cut(s) 21, 27, 117, 714, 841
BssT1I CCWWGG 3 cut(s) 282, 792, 798
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 4 cut(s) 373, 420, 733, 856
Bst6I CTCTTC 4 cut(s) 66, 441, 489, 863
BstAFI CTTAAG 1 cut(s) 455
BstAPI GCANNNNNTGC 2 cut(s) 135, 809
BstC8I GCNNGC 2 cut(s) 35, 379
BstDEI CTNAG 9 cut(s) 184, 222, 396, 488, 517, 549, 620, 668, 750
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 3 cut(s) 391, 406, 933
BstFNI CGCG 1 cut(s) 862
BstKTI GATC 5 cut(s) 24, 30, 120, 717, 844
BstMAI GTCTC 3 cut(s) 486, 561, 810
BstMBI GATC 5 cut(s) 21, 27, 117, 714, 841
BstMWI GCNNNNNNNGC 8 cut(s) 39, 120, 135, 218, 746, 788, 809, 884
BstNI CCWGG 1 cut(s) 533
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 531
BstSFI CTRYAG 3 cut(s) 127, 416, 810
BstUI CGCG 1 cut(s) 862
BstV1I GCAGC 6 cut(s) 67, 98, 727, 781, 811, 890
BstV2I GAAGAC 2 cut(s) 477, 566
BstX2I RGATCY 2 cut(s) 27, 117
BstYI RGATCY 2 cut(s) 27, 117
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 3 cut(s) 281, 791, 797
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 3 cut(s) 391, 406, 933
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 665
BtuMI TCGCGA 1 cut(s) 862
Cac8I GCNNGC 2 cut(s) 35, 379
CaiI CAGNNNCTG 1 cut(s) 737
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 482
CviAII CATG 4 cut(s) 139, 410, 890, 938
DdeI CTNAG 9 cut(s) 184, 222, 396, 488, 517, 549, 620, 668, 750
DpnI GATC 5 cut(s) 23, 29, 119, 716, 843
DpnII GATC 5 cut(s) 21, 27, 117, 714, 841
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 4 cut(s) 66, 441, 489, 863
EarI CTCTTC 4 cut(s) 66, 441, 489, 863
Eco130I CCWWGG 3 cut(s) 282, 792, 798
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 4 cut(s) 69, 180, 822, 887
Eco81I CCTNAGG 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 531
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 3 cut(s) 282, 792, 798
EcoT22I ATGCAT 1 cut(s) 504
ErhI CCWWGG 3 cut(s) 282, 792, 798
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 4 cut(s) 142, 413, 893, 941
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 438, 470
FaqI GGGAC 1 cut(s) 424
FatI CATG 4 cut(s) 138, 409, 889, 937
FauI CCCGC 3 cut(s) 107, 308, 370
Fnu4HI GCNGC 7 cut(s) 78, 81, 112, 741, 770, 825, 879
FokI GGATG 3 cut(s) 378, 413, 940
Fsp4HI GCNGC 7 cut(s) 78, 81, 112, 741, 770, 825, 879
GluI GCNGC 7 cut(s) 78, 81, 112, 741, 770, 825, 879
HaeIII GGCC 3 cut(s) 281, 791, 797
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 482
Hin1II CATG 4 cut(s) 142, 413, 893, 941
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 7 cut(s) 182, 479, 528, 596, 624, 848, 941
HpaII CCGG 1 cut(s) 335
Hpy188I TCNGA 8 cut(s) 88, 105, 187, 199, 291, 491, 550, 841
Hpy188III TCNNGA 6 cut(s) 25, 46, 398, 653, 845, 861
HpyAV CCTTC 6 cut(s) 204, 271, 304, 310, 572, 739
HpyCH4III ACNGT 4 cut(s) 373, 420, 733, 856
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 7 cut(s) 18, 123, 129, 138, 502, 812, 893
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 120, 135, 218, 746, 788, 809, 884
HpyF3I CTNAG 9 cut(s) 184, 222, 396, 488, 517, 549, 620, 668, 750
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 4 cut(s) 142, 413, 893, 941
Kzo9I GATC 5 cut(s) 21, 27, 117, 714, 841
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 9 cut(s) 192, 222, 348, 383, 518, 545, 549, 626, 798
Lsp1109I GCAGC 6 cut(s) 67, 98, 727, 781, 811, 890
LweI GCATC 2 cut(s) 29, 511
MaeII ACGT 1 cut(s) 570
MalI GATC 5 cut(s) 23, 29, 119, 716, 843
MboI GATC 5 cut(s) 21, 27, 117, 714, 841
MflI RGATCY 2 cut(s) 27, 117
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 2 cut(s) 674, 804
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 3 cut(s) 176, 590, 633
Mox20I TGGCCA 1 cut(s) 791
Mph1103I ATGCAT 1 cut(s) 504
MroXI GAANNNNTTC 2 cut(s) 450, 483
MscI TGGCCA 1 cut(s) 791
MseI TTAA 2 cut(s) 365, 456
Msp20I TGGCCA 1 cut(s) 791
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 1 cut(s) 862
MwoI GCNNNNNNNGC 8 cut(s) 39, 120, 135, 218, 746, 788, 809, 884
NdeII GATC 5 cut(s) 21, 27, 117, 714, 841
NlaIII CATG 4 cut(s) 142, 413, 893, 941
NlaIV GGNNCC 4 cut(s) 207, 288, 297, 360
NruI TCGCGA 1 cut(s) 862
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 1 cut(s) 413
PdmI GAANNNNTTC 2 cut(s) 450, 483
PfeI GAWTC 4 cut(s) 479, 528, 848, 941
PkrI GCNGC 7 cut(s) 79, 82, 113, 742, 771, 826, 880
PleI GAGTC 3 cut(s) 176, 590, 632
PpsI GAGTC 3 cut(s) 176, 590, 632
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 4 cut(s) 207, 288, 297, 360
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PsrI GAACNNNNNNTAC 2 cut(s) 330, 362
PstI CTGCAG 2 cut(s) 131, 814
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 2 cut(s) 27, 117
RruI TCGCGA 1 cut(s) 862
SaqAI TTAA 2 cut(s) 365, 456
SatI GCNGC 7 cut(s) 78, 81, 112, 741, 770, 825, 879
Sau3AI GATC 5 cut(s) 21, 27, 117, 714, 841
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 3 cut(s) 176, 590, 633
ScrFI CCNGG 1 cut(s) 533
SfaNI GCATC 2 cut(s) 29, 511
SfcI CTRYAG 3 cut(s) 127, 416, 810
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 3 cut(s) 44, 455, 882
SmoI CTYRAG 3 cut(s) 44, 455, 882
Sse9I AATT 2 cut(s) 674, 804
SsiI CCGC 5 cut(s) 77, 114, 212, 301, 377
StyD4I CCNGG 1 cut(s) 531
StyI CCWWGG 3 cut(s) 282, 792, 798
TaaI ACNGT 4 cut(s) 373, 420, 733, 856
TaiI ACGT 1 cut(s) 573
TaqI TCGA 3 cut(s) 169, 526, 706
TasI AATT 2 cut(s) 674, 804
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 4 cut(s) 479, 528, 848, 941
Tru1I TTAA 2 cut(s) 365, 456
Tru9I TTAA 2 cut(s) 365, 456
TscAI CASTG 2 cut(s) 136, 672
TseI GCWGC 6 cut(s) 80, 111, 740, 769, 824, 878
TspDTI ATGAA 3 cut(s) 155, 246, 667
TspRI CASTG 2 cut(s) 136, 672
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 446
XapI RAATTY 1 cut(s) 674
XceI RCATGY 1 cut(s) 413
XmnI GAANNNNTTC 2 cut(s) 450, 483
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.