Rh2CG513200

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000951
Physical Location & Seq
Reverse (-)
68702810 .. 68705649
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG513200.1

Sequence Viewer

Length: 1131 bp
ATGGCCGGAGAAGGAGTATTCTGTCACCAGTGCCGCCAAAGGACCACGAAACGTGTGTTCTTGTGCAACAATGTCATGGGGAAACGCCAATGCAAGATCAAGATCTGCGAGCGGTGCCTCAAGAAAAGATATGTAGATATTACAGAAGAGGCGGCTGCTTCAGATGATTGGAAGTGTCCGAAATGCTGCGGGATCTGCAACTGCAGTGTGTGCATGAAGCGAGAGGGTAAAGAACCTCTTGGTCGAGCTGTGCCTGACTCAGAGAATCCTTCAGAGGAGGAGCCTGCGGGAGTGTCTGAGCCAAATAGAGAGGAAGAAAACCAAAAAGAAGATGTTGGCAAGGGCAAGAGGAAGGCCAAGGCTCCTAGGGAACCTCGCAGAGTGAAGGCAAAGGAGGAAGTAGTTGAGCCTGAACTTCCTCTGCCTTTGGGGGTTCCCTTAACAACTGTTGCGGGCATTGAACTACATCCTCAGGATGTAGGACATGCCCTACAGTTTATAGAGTTCTGTGTGGCCCTTGAAGAGGAACTGCCCTCAGATTTCTTTAGTAGAGGAGTTGAGGGGTATGACTCCTTGGACTTCTCCCAGAAGCTTAGAGTCCTAACTTTCCTTTGTGATGAGGCCCTTGGCACCAAATCACTGAGCAATTTCATAGAAAGCCAAAAAGAAATATTCTCTAAAAGTAAGATCGCAGCAAAACGAAAGTATCTGCTGCGAAGGCTAAGTTCAGCAGCTCAAGATCATGCAGAGTTGCTTGAAGCAAAAGCCTTGAAATCAAGGATGATACGACAAGATTCTGTGCGAACAGAGCCTTATCTGTTCGATGCTGATGGTTGTGCATTTTGGAGATTGACAGGCTATGGTGATGGAGATGATGTGCTGCTTCAAGATGTAGGAACTTGGGATCCATTTACATCTTCTGATGAAAAATGGTTCCAGTATGGGGCAGAAAAGAAAGAAGCAGTTGAAAAATACTGCTCCTGTAAGGACAAGAGGCCTTTATGTCTGAAACCCTGTCTCAAACACTTCCTTCAAGTTCTGGAACACTTCCTTCAAGTTCTGGAAGTAAGGAAGAAGAGAAGCTTGAAAATGCGACTACTGGAAGCAGAGAAGAAGACATACCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

376

Amino Acids

42.87

Weight (kDa)

8.3

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 4 - 84 8.5e-21 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 114, 629
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 6 cut(s) 34, 112, 152, 189, 287, 452
AclWI GGATC 3 cut(s) 200, 899, 912
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 144, 255
AfiI CCNNNNNNNGG 2 cut(s) 523, 943
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 9 cut(s) 461, 521, 758, 772, 887, 968, 1034, 1055, 1087
AloI GAACNNNNNNTCC 2 cut(s) 889, 921
AluBI AGCT 4 cut(s) 248, 592, 734, 1083
AluI AGCT 4 cut(s) 248, 592, 734, 1083
Alw26I GTCTC 1 cut(s) 1022
AlwI GGATC 3 cut(s) 200, 899, 912
AoxI GGCC 5 cut(s) 3, 354, 513, 621, 995
ApeKI GCWGC 6 cut(s) 155, 186, 692, 712, 731, 880
AspA2I CCTAGG 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 42, 514, 622
AsuHPI GGTGA 2 cut(s) 17, 875
AvaII GGWCC 1 cut(s) 42
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 471
BaeI ACNNNNGTAYC 2 cut(s) 689, 722
BamHI GGATCC 1 cut(s) 904
BanI GGYRCC 2 cut(s) 114, 629
BarI GAAGNNNNNNTAC 1 cut(s) 1103
BbsI GAAGAC 1 cut(s) 1121
BbvI GCAGC 6 cut(s) 142, 173, 699, 704, 743, 867
BccI CCATC 2 cut(s) 824, 860
BcoDI GTCTC 1 cut(s) 1022
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 202, 491
BglII AGATCT 1 cut(s) 102
BisI GCNGC 8 cut(s) 34, 153, 156, 187, 693, 713, 732, 881
BlnI CCTAGG 1 cut(s) 365
BlsI GCNGC 8 cut(s) 35, 154, 157, 188, 694, 714, 733, 882
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 3 cut(s) 42, 514, 622
BmiI GGNNCC 8 cut(s) 116, 282, 363, 372, 435, 631, 906, 935
BmsI GCATC 1 cut(s) 814
BpiI GAAGAC 1 cut(s) 1121
BpuEI CTTGAG 2 cut(s) 104, 720
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 357, 365, 573, 625
BsaXI ACNNNNNCTCC 3 cut(s) 30, 861, 891
Bsc4I CCNNNNNNNGG 2 cut(s) 523, 943
Bse1I ACTGG 3 cut(s) 28, 937, 1104
Bse21I CCTNAGG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 101
BseDI CCNNGG 4 cut(s) 357, 365, 573, 625
BseGI GGATG 3 cut(s) 466, 481, 786
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 523, 943
BseMII CTCAG 5 cut(s) 273, 288, 485, 549, 632
BseNI ACTGG 3 cut(s) 28, 937, 1104
BseRI GAGGAG 3 cut(s) 290, 293, 567
BseXI GCAGC 6 cut(s) 142, 173, 699, 704, 743, 867
BshFI GGCC 5 cut(s) 5, 356, 515, 623, 997
BshNI GGYRCC 2 cut(s) 114, 629
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 523, 943
BsmAI GTCTC 1 cut(s) 1022
BsnI GGCC 5 cut(s) 5, 356, 515, 623, 997
Bsp143I GATC 6 cut(s) 96, 102, 192, 687, 739, 904
BspACI CCGC 6 cut(s) 34, 112, 152, 189, 287, 452
BspANI GGCC 5 cut(s) 5, 356, 515, 623, 997
BspCNI CTCAG 5 cut(s) 272, 289, 484, 548, 633
BspLI GGNNCC 8 cut(s) 116, 282, 363, 372, 435, 631, 906, 935
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 3 cut(s) 200, 899, 912
BspT107I GGYRCC 2 cut(s) 114, 629
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 3 cut(s) 28, 937, 1104
BssECI CCNNGG 4 cut(s) 357, 365, 573, 625
BssMI GATC 6 cut(s) 96, 102, 192, 687, 739, 904
BssT1I CCWWGG 4 cut(s) 357, 365, 573, 625
Bst4CI ACNGT 2 cut(s) 448, 495
Bst6I CTCTTC 3 cut(s) 141, 516, 1070
BstAPI GCANNNNNTGC 1 cut(s) 210
BstC8I GCNNGC 3 cut(s) 110, 285, 454
BstDEI CTNAG 7 cut(s) 259, 297, 471, 535, 593, 641, 722
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 466, 481, 786
BstKTI GATC 6 cut(s) 99, 105, 195, 690, 742, 907
BstMAI GTCTC 1 cut(s) 1022
BstMBI GATC 6 cut(s) 96, 102, 192, 687, 739, 904
BstMWI GCNNNNNNNGC 5 cut(s) 114, 195, 210, 718, 808
BstNSI RCATGY 1 cut(s) 488
BstSFI CTRYAG 2 cut(s) 202, 491
BstV1I GCAGC 6 cut(s) 142, 173, 699, 704, 743, 867
BstV2I GAAGAC 1 cut(s) 1121
BstX2I RGATCY 3 cut(s) 102, 192, 904
BstYI RGATCY 3 cut(s) 102, 192, 904
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 5 cut(s) 5, 356, 515, 623, 997
BtsCI GGATG 3 cut(s) 466, 481, 786
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 35, 211, 638
Cac8I GCNNGC 3 cut(s) 110, 285, 454
Cfr13I GGNCC 3 cut(s) 42, 514, 622
CviAII CATG 4 cut(s) 76, 214, 485, 743
DdeI CTNAG 7 cut(s) 259, 297, 471, 535, 593, 641, 722
DpnI GATC 6 cut(s) 98, 104, 194, 689, 741, 906
DpnII GATC 6 cut(s) 96, 102, 192, 687, 739, 904
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 141, 516, 1070
EarI CTCTTC 3 cut(s) 141, 516, 1070
Eco130I CCWWGG 4 cut(s) 357, 365, 573, 625
Eco147I AGGCCT 1 cut(s) 997
Eco47I GGWCC 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 144, 255
Eco81I CCTNAGG 1 cut(s) 471
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 622
EcoT14I CCWWGG 4 cut(s) 357, 365, 573, 625
ErhI CCWWGG 4 cut(s) 357, 365, 573, 625
FaeI CATG 4 cut(s) 79, 217, 488, 746
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 1067, 1099
FatI CATG 4 cut(s) 75, 213, 484, 742
FauI CCCGC 3 cut(s) 182, 280, 445
Fnu4HI GCNGC 8 cut(s) 34, 153, 156, 187, 693, 713, 732, 881
FokI GGATG 3 cut(s) 453, 488, 793
Fsp4HI GCNGC 8 cut(s) 34, 153, 156, 187, 693, 713, 732, 881
FspBI CTAG 1 cut(s) 366
GluI GCNGC 8 cut(s) 34, 153, 156, 187, 693, 713, 732, 881
HaeIII GGCC 5 cut(s) 5, 356, 515, 623, 997
HapII CCGG 1 cut(s) 6
Hin1II CATG 4 cut(s) 79, 217, 488, 746
HindIII AAGCTT 2 cut(s) 590, 1081
HinfI GANTC 5 cut(s) 257, 265, 569, 597, 794
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 17, 875
Hpy188I TCNGA 8 cut(s) 163, 180, 262, 274, 298, 538, 922, 1008
Hpy188III TCNNGA 7 cut(s) 100, 121, 473, 737, 887, 1040, 1061
HpyAV CCTTC 7 cut(s) 5, 279, 346, 379, 711, 1040, 1061
HpyCH4III ACNGT 2 cut(s) 448, 495
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 7 cut(s) 66, 93, 198, 204, 213, 746, 839
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 195, 210, 718, 808
HpyF3I CTNAG 7 cut(s) 259, 297, 471, 535, 593, 641, 722
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 4 cut(s) 79, 217, 488, 746
Kzo9I GATC 6 cut(s) 96, 102, 192, 687, 739, 904
LmnI GCTCC 3 cut(s) 280, 367, 983
Lsp1109I GCAGC 6 cut(s) 142, 173, 699, 704, 743, 867
LweI GCATC 1 cut(s) 814
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 23
MalI GATC 6 cut(s) 98, 104, 194, 689, 741, 906
MbiI CCGCTC 1 cut(s) 112
MboI GATC 6 cut(s) 96, 102, 192, 687, 739, 904
MboII GAAGA 9 cut(s) 158, 326, 341, 533, 909, 1084, 1087, 1123, 1126
MflI RGATCY 3 cut(s) 102, 192, 904
MluCI AATT 1 cut(s) 646
MlyI GAGTC 3 cut(s) 251, 563, 606
MseI TTAA 1 cut(s) 440
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 5 cut(s) 114, 195, 210, 718, 808
NdeII GATC 6 cut(s) 96, 102, 192, 687, 739, 904
NlaIII CATG 4 cut(s) 79, 217, 488, 746
NlaIV GGNNCC 8 cut(s) 116, 282, 363, 372, 435, 631, 906, 935
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 488
PceI AGGCCT 1 cut(s) 997
PfeI GAWTC 2 cut(s) 265, 794
PkrI GCNGC 8 cut(s) 35, 154, 157, 188, 694, 714, 733, 882
PleI GAGTC 3 cut(s) 251, 563, 605
PpsI GAGTC 3 cut(s) 251, 563, 605
PspN4I GGNNCC 8 cut(s) 116, 282, 363, 372, 435, 631, 906, 935
PspPI GGNCC 3 cut(s) 42, 514, 622
PstI CTGCAG 1 cut(s) 206
PsuI RGATCY 3 cut(s) 102, 192, 904
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 8 cut(s) 34, 153, 156, 187, 693, 713, 732, 881
Sau3AI GATC 6 cut(s) 96, 102, 192, 687, 739, 904
Sau96I GGNCC 3 cut(s) 42, 514, 622
SchI GAGTC 3 cut(s) 251, 563, 606
SetI ASST 7 cut(s) 55, 238, 250, 376, 594, 736, 1085
SfaNI GCATC 1 cut(s) 814
SfcI CTRYAG 2 cut(s) 202, 491
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 2 cut(s) 119, 735
SmoI CTYRAG 2 cut(s) 119, 735
Sse9I AATT 1 cut(s) 646
SseBI AGGCCT 1 cut(s) 997
SsiI CCGC 6 cut(s) 34, 112, 152, 189, 287, 452
SspI AATATT 1 cut(s) 672
SspMI CTAG 1 cut(s) 366
StuI AGGCCT 1 cut(s) 997
StyI CCWWGG 4 cut(s) 357, 365, 573, 625
TaaI ACNGT 2 cut(s) 448, 495
TaiI ACGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 244, 822
TasI AATT 1 cut(s) 646
TauI GCSGC 2 cut(s) 36, 155
TfiI GAWTC 2 cut(s) 265, 794
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 3 cut(s) 35, 211, 645
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 6 cut(s) 155, 186, 692, 712, 731, 880
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 230, 640, 939
TspRI CASTG 3 cut(s) 35, 211, 645
VpaK11BI GGWCC 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 521
XceI RCATGY 1 cut(s) 488
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.