Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

31869631 .. 31889176

Gene Structure 19546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAGCGGGGGTGGCTCCGGGAGTTTGTGGTTGGATTATTAGAAATTTCATAAGAGAAGGAACTTCCCCAAATGAGTCTCTCGGATGCGCCCCGAAATGGTTTCAGCTCAAATCCTCAAATAGGCATCCACTCGGTGCTCTATCTTTTCATGGCGGTCTATTTGTTCATTCTTCTCTTGAGTACCCTCTTGGTGTTGTGCTTGTACCTATAGGAAGCAGGACAGGAAAAGCTTTTCGTACAACAAACCTGGTTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTGTCACGTGTGGAGATGAGTTGATAGTGGATCTTGGGTGTCGGTCTAAATTCCATGAAGAGGTAGACTCCAATGAGGCCATGAGAGCAGCAAAGCTTGCAAAGCTAGACTCCTTAAGGATTCAAAAGGTTGGTGGTGGATGGCTACACTTATTTAGAATTGGCCTTTGTTTGGAGATGAAGAAATGGGCACGTGGGCTGGCTACCACCTCGATGGCCACCAAATTTTGGCGGTTACACCTACTCAACAAGCCCAACACTTTTCTCAACTATGACAATTTCTTCCTTGTGTGTGGTATCCTCGGATTCACAGCAAGGTACTCCACCACCACCGGAATCGCAACCATCCTCATCGCCGATGCCCCCGCACGCAGGCGAGGCGAGAGGCGAGCCACCCTAAAATGCCAAATCGGTTCGGTCGACGACGATGTCGGGTTTAATCTAGAAAGGGTTTTCGCCCTATCTTGGCCGGACTCCGACTTTATCCTCGAAGCCCCGAGGACAGAACGACAACAATTCGCCGAGGAATTGCAACGCCGCAAGATTCGGATTCTAATGTCTATGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

289

Amino Acids

32.18

Weight (kDa)

9.7

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	2 cut(s)	366, 720
AciI	CCGC	6 cut(s)	8, 156, 532, 666, 838, 865
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	2 cut(s)	516, 767
AcsI	RAATTY	3 cut(s)	46, 350, 524
AcvI	CACGTG	2 cut(s)	309, 494
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	4 cut(s)	185, 207, 241, 620
AfiI	CCNNNNNNNGG	7 cut(s)	99, 123, 361, 472, 528, 672, 765
AflII	CTTAAG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	109, 233, 397, 406
AluI	AGCT	4 cut(s)	109, 233, 397, 406
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	796
AoxI	GGCC	4 cut(s)	378, 463, 516, 767
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	3 cut(s)	46, 350, 524
AspLEI	GCGC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	796
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	518
BbrPI	CACGTG	2 cut(s)	309, 494
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	435, 508, 653
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	407, 743
BfmI	CTRYAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	2 cut(s)	390, 838
BlsI	GCNGC	2 cut(s)	391, 839
Bme1390I	CCNGG	2 cut(s)	21, 251
BmeT110I	CYCGRG	1 cut(s)	796
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	21, 251
BmsI	GCATC	3 cut(s)	77, 136, 649
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	21
BsaAI	YACGTR	2 cut(s)	309, 494
BsaJI	CCNNGG	3 cut(s)	601, 797, 822
BsaWI	WCCGGW	1 cut(s)	632
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	7 cut(s)	99, 123, 361, 472, 528, 672, 765
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	601, 797, 822
BseGI	GGATG	4 cut(s)	92, 127, 446, 645
BseLI	CCNNNNNNNGG	7 cut(s)	99, 123, 361, 472, 528, 672, 765
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	720
BshFI	GGCC	4 cut(s)	380, 465, 518, 769
BsiEI	CGRYCG	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	796
BsiSI	CCGG	3 cut(s)	20, 633, 770
BslI	CCNNNNNNNGG	7 cut(s)	99, 123, 361, 472, 528, 672, 765
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	380, 465, 518, 769
BsoBI	CYCGRG	1 cut(s)	796
Bsp1286I	GDGCHC	2 cut(s)	142, 493
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	6 cut(s)	8, 156, 532, 666, 838, 865
BspANI	GGCC	4 cut(s)	380, 465, 518, 769
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	601, 797, 822
BssMI	GATC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	2 cut(s)	309, 494
BstC8I	GCNNGC	5 cut(s)	399, 501, 670, 674, 690
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	92, 127, 446, 645
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 386, 398, 403, 678
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	19, 249
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	4 cut(s)	380, 465, 518, 769
BtgZI	GCGATG	1 cut(s)	637
BtsCI	GGATG	4 cut(s)	92, 127, 446, 645
Cac8I	GCNNGC	5 cut(s)	399, 501, 670, 674, 690
CfoI	GCGC	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	4 cut(s)	184, 206, 240, 619
CviAII	CATG	3 cut(s)	152, 356, 382
CviQI	GTAC	4 cut(s)	184, 206, 240, 619
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	137
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
EaeI	YGGCCR	2 cut(s)	516, 767
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco72I	CACGTG	2 cut(s)	309, 494
Eco88I	CYCGRG	1 cut(s)	796
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	155, 359, 385
FaiI	YATR	7 cut(s)	53, 153, 212, 357, 383, 573, 863
FatI	CATG	3 cut(s)	151, 355, 381
FauI	CCCGC	1 cut(s)	673
FblI	GTMKAC	2 cut(s)	366, 720
Fnu4HI	GCNGC	2 cut(s)	390, 838
FokI	GGATG	4 cut(s)	99, 114, 453, 632
Fsp4HI	GCNGC	2 cut(s)	390, 838
FspBI	CTAG	2 cut(s)	407, 743
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	390, 838
HaeIII	GGCC	4 cut(s)	380, 465, 518, 769
HapII	CCGG	3 cut(s)	20, 633, 770
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	155, 359, 385
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	2 cut(s)	231, 395
HpaII	CCGG	3 cut(s)	20, 633, 770
Hpy166II	GTNNAC	2 cut(s)	367, 721
Hpy188I	TCNGA	4 cut(s)	86, 605, 778, 849
Hpy188III	TCNNGA	3 cut(s)	179, 288, 743
Hpy8I	GTNNAC	2 cut(s)	367, 721
Hpy99I	CGWCG	2 cut(s)	725, 728
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	308, 493
HpyCH4V	TGCA	3 cut(s)	263, 401, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 386, 398, 403, 678
HpySE526I	ACGT	2 cut(s)	308, 493
Hsp92II	CATG	3 cut(s)	155, 359, 385
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	5, 22
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	3 cut(s)	77, 136, 649
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	2 cut(s)	407, 743
MaeII	ACGT	2 cut(s)	308, 493
MaeIII	GTNAC	2 cut(s)	304, 534
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	165, 371, 493, 574
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	142, 493
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	7 cut(s)	46, 350, 459, 524, 577, 815, 827
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	4 cut(s)	86, 362, 404, 767
MmeI	TCCRAC	2 cut(s)	14, 801
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	2 cut(s)	416, 738
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	3 cut(s)	20, 633, 770
MspR9I	CCNGG	2 cut(s)	21, 251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	5 cut(s)	14, 386, 398, 403, 678
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	3 cut(s)	155, 359, 385
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PfeI	GAWTC	6 cut(s)	284, 421, 606, 636, 844, 850
PflFI	GACNNNGTC	1 cut(s)	728
PflMI	CCANNNNNTGG	1 cut(s)	528
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	391, 839
PleI	GAGTC	4 cut(s)	85, 362, 404, 767
PmaCI	CACGTG	2 cut(s)	309, 494
PmlI	CACGTG	2 cut(s)	309, 494
PpsI	GAGTC	4 cut(s)	85, 362, 404, 767
Ppu21I	YACGTR	2 cut(s)	309, 494
Psp6I	CCWGG	1 cut(s)	249
PspCI	CACGTG	2 cut(s)	309, 494
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	728
RsaI	GTAC	4 cut(s)	185, 207, 241, 620
RsaNI	GTAC	4 cut(s)	184, 206, 240, 619
RseI	CAYNNNNRTG	1 cut(s)	512
SalI	GTCGAC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	416, 738
SatI	GCNGC	2 cut(s)	390, 838
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	4 cut(s)	86, 362, 404, 767
ScrFI	CCNGG	2 cut(s)	21, 251
SduI	GDGCHC	2 cut(s)	142, 493
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	77, 136, 649
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	179, 415
SmoI	CTYRAG	2 cut(s)	179, 415
Sse9I	AATT	7 cut(s)	46, 350, 459, 524, 577, 815, 827
SsiI	CCGC	6 cut(s)	8, 156, 532, 666, 838, 865
SspMI	CTAG	2 cut(s)	407, 743
StyD4I	CCNGG	2 cut(s)	19, 249
TaiI	ACGT	2 cut(s)	311, 496
TaqI	TCGA	3 cut(s)	512, 720, 789
TaqII	GACCGA	2 cut(s)	333, 706
TasI	AATT	7 cut(s)	46, 350, 459, 524, 577, 815, 827
TauI	GCSGC	1 cut(s)	840
TfiI	GAWTC	6 cut(s)	284, 421, 606, 636, 844, 850
Tru1I	TTAA	2 cut(s)	416, 738
Tru9I	TTAA	2 cut(s)	416, 738
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	40, 140, 158, 372, 494
Tth111I	GACNNNGTC	1 cut(s)	728
Van91I	CCANNNNNTGG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	3 cut(s)	46, 350, 524
XbaI	TCTAGA	1 cut(s)	742
XmiI	GTMKAC	2 cut(s)	366, 720
XspI	CTAG	2 cut(s)	407, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.