Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Forward (+)

62216548 .. 62218527

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGTAAGGTTGATGACGGGTGGTCTCCAATCGGGTGGGAGTCTTATCGGACTCCGTCTCTGTTTAATGGGAGCAATTCGTCGATTTGCTTCCGACCGCACAGAGCTGCTGCCCCTGCCCTAAAATCCCAACACGGATTTCTCGATGACATGGCCGTCAATCTCAGTAGGGTTTTCGTACTCTCTGTCCTAGATTCCGAGTTTGTTCTCGAGGCCCTCAGGACAGAACGCGAAAAATTCGCAGAAGAATTGCAACGCCAGAAGATTCGTACTCTAATGTCCATGCGGCATATGACAGGTTCTTGGAAGAGCCATATTCATTCAATGGCAGTTTCTGGCATATATGGGAGTGGCGTTGCAAGATCATTTTTGAGCCGGGTTCCACCACCCTTCTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.97

Weight (kDa)

9.64

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	98, 286
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	2 cut(s)	180, 271
AgsI	TTSAA	1 cut(s)	324
AhdI	GACNNNNNGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	30, 63
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	153, 213
ApeKI	GCWGC	2 cut(s)	107, 110
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	94, 97
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	30, 63
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	3 cut(s)	108, 111, 287
BlsI	GCNGC	3 cut(s)	109, 112, 288
Bme1390I	CCNGG	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	178, 232
BseXI	GCAGC	2 cut(s)	94, 97
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	155, 215
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	30, 63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	155, 215
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	2 cut(s)	98, 286
BspANI	GGCC	2 cut(s)	155, 215
BspCNI	CTCAG	2 cut(s)	177, 231
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	381
BspQI	GCTCTTC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	30
BssMI	GATC	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	164, 218
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	2 cut(s)	30, 63
BstMBI	GATC	1 cut(s)	362
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	94, 97
BstXI	CCANNNNNNTGG	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	155, 215
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	179, 270
CspCI	CAANNNNNGTGG	1 cut(s)	375
CviAII	CATG	2 cut(s)	151, 283
CviJI	RGCY	5 cut(s)	107, 155, 215, 312, 375
CviKI_1	RGCY	5 cut(s)	107, 155, 215, 312, 375
CviQI	GTAC	2 cut(s)	179, 270
DdeI	CTNAG	2 cut(s)	164, 218
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
DrdI	GACNNNNNNGTC	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	302
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	154, 286
FaiI	YATR	8 cut(s)	152, 284, 291, 293, 315, 341, 343, 345
FatI	CATG	2 cut(s)	150, 282
FauNDI	CATATG	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	108, 111, 287
Fsp4HI	GCNGC	3 cut(s)	108, 111, 287
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	3 cut(s)	108, 111, 287
HaeIII	GGCC	2 cut(s)	155, 215
HapII	CCGG	1 cut(s)	376
Hin1II	CATG	2 cut(s)	154, 286
HinfI	GANTC	4 cut(s)	41, 52, 194, 265
HpaII	CCGG	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	51, 95, 199
Hpy188III	TCNNGA	3 cut(s)	143, 209, 220
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	253, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	164, 218
Hsp92II	CATG	2 cut(s)	154, 286
Kzo9I	GATC	1 cut(s)	362
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	6 cut(s)	129, 205, 272, 282, 321, 389
Lsp1109I	GCAGC	2 cut(s)	94, 97
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	3 cut(s)	257, 274, 319
MluCI	AATT	3 cut(s)	76, 236, 248
MlyI	GAGTC	2 cut(s)	46, 50
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	205, 227
MseI	TTAA	1 cut(s)	66
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	377
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	2 cut(s)	154, 286
NlaIV	GGNNCC	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	194, 265
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	109, 112, 288
PleI	GAGTC	2 cut(s)	46, 49
PpsI	GAGTC	2 cut(s)	46, 49
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	180, 271
RsaNI	GTAC	2 cut(s)	179, 270
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	3 cut(s)	108, 111, 287
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	46, 50
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	3 cut(s)	12, 109, 301
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	76, 236, 248
SsiI	CCGC	2 cut(s)	98, 286
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	375
TaqI	TCGA	3 cut(s)	83, 144, 210
TasI	AATT	3 cut(s)	76, 236, 248
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	194, 265
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	107, 110
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	2 cut(s)	45, 150
Tth111I	GACNNNGTC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.