Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Forward (+)

37106044 .. 37106658

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG325400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCTCAACACGATCAATTGGCTACTCCACCTCCACCGCCCTTGGTATCGCCGCAATCCTCATCACCGATTTGTTTCCCATTGCCGCGCCGAGTCTCCTCAAAATCCAAAATCGGTTCTGTGGATGACATCGCGGTTGATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTGTGCTTGAGGCTCTGAGGAGAGAACGCCAAGAATTTGCGGAGGAGTTGCGGCGCCGCAAAATTCGCACGTTAATGTCTATGCGGGTGCTAGGAAAGGCTCTGTTTCTCAGGTTTGGAATGCACAATAAAGCATGGGTTGCCTTTCCCAGAGGTTTCAACATTCAAAGACTGGTGCTTTTGTTCAAATCAATCAACCGTCTTCGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

15.02

Weight (kDa)

11.41

Isoelectric Point (pI)

80.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	234
AccII	CGCG	2 cut(s)	88, 134
AciI	CCGC	8 cut(s)	38, 53, 86, 134, 221, 232, 238, 265
AcsI	RAATTY	2 cut(s)	215, 243
AcyI	GRCGYC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	340, 347, 367
Alw26I	GTCTC	2 cut(s)	9, 100
ApoI	RAATTY	2 cut(s)	215, 243
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	2 cut(s)	90, 237
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	9, 100
BfaI	CTAG	2 cut(s)	170, 272
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	4 cut(s)	53, 86, 233, 238
BlsI	GCNGC	4 cut(s)	54, 87, 234, 239
BmiI	GGNNCC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	188, 304
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	88, 214, 239
Bsh1236I	CGCG	2 cut(s)	88, 134
BshNI	GGYRCC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	9, 100
BsmI	GAATGC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	13, 139
BspACI	CCGC	8 cut(s)	38, 53, 86, 134, 221, 232, 238, 265
BspCNI	CTCAG	2 cut(s)	189, 303
BspFNI	CGCG	2 cut(s)	88, 134
BspLI	GGNNCC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	13, 139
BssNI	GRCGYC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	197, 290
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	2 cut(s)	88, 134
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	90, 237
BstKTI	GATC	2 cut(s)	16, 142
BstMAI	GTCTC	2 cut(s)	9, 100
BstMBI	GATC	2 cut(s)	13, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 320
BstUI	CGCG	2 cut(s)	88, 134
BstV2I	GAAGAC	1 cut(s)	374
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	130
CfoI	GCGC	2 cut(s)	90, 237
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	4 cut(s)	23, 169, 194, 281
CviKI_1	RGCY	4 cut(s)	23, 169, 194, 281
DdeI	CTNAG	2 cut(s)	197, 290
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	2 cut(s)	15, 141
DpnII	GATC	2 cut(s)	13, 139
Eco130I	CCWWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	42
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	318
FaiI	YATR	2 cut(s)	263, 316
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	53, 86, 233, 238
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	4 cut(s)	53, 86, 233, 238
FspBI	CTAG	2 cut(s)	170, 272
GlaI	GCGC	2 cut(s)	89, 236
GluI	GCNGC	4 cut(s)	53, 86, 233, 238
HaeII	RGCGCY	1 cut(s)	238
HhaI	GCGC	2 cut(s)	90, 237
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	2 cut(s)	88, 235
HinP1I	GCGC	2 cut(s)	88, 235
HinfI	GANTC	2 cut(s)	93, 173
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	178, 198
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 320
HpyF3I	CTNAG	2 cut(s)	197, 290
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	2 cut(s)	88, 235
KasI	GGCGCC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	13, 139
LpnPI	CCDG	3 cut(s)	277, 338, 343
MaeI	CTAG	2 cut(s)	170, 272
MaeII	ACGT	1 cut(s)	251
MalI	GATC	2 cut(s)	15, 141
MboI	GATC	2 cut(s)	13, 139
MboII	GAAGA	1 cut(s)	374
MfeI	CAATTG	1 cut(s)	17
MluCI	AATT	3 cut(s)	17, 215, 243
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	102, 167
MnlI	CCTC	7 cut(s)	42, 70, 109, 184, 192, 217, 326
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	306
MvnI	CGCG	2 cut(s)	88, 134
MwoI	GCNNNNNNNGC	2 cut(s)	246, 320
NarI	GGCGCC	1 cut(s)	235
NdeII	GATC	2 cut(s)	13, 139
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	236
NmeAIII	GCCGAG	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	54, 87, 234, 239
PleI	GAGTC	2 cut(s)	101, 167
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	2 cut(s)	101, 167
PspN4I	GGNNCC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	4 cut(s)	53, 86, 233, 238
Sau3AI	GATC	2 cut(s)	13, 139
SchI	GAGTC	2 cut(s)	102, 167
SetI	ASST	4 cut(s)	34, 254, 296, 337
SfoI	GGCGCC	1 cut(s)	236
SfuI	TTCGAA	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	17, 215, 243
SsiI	CCGC	8 cut(s)	38, 53, 86, 134, 221, 232, 238, 265
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	170, 272
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	385
TasI	AATT	3 cut(s)	17, 215, 243
TauI	GCSGC	4 cut(s)	55, 88, 235, 240
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
XapI	RAATTY	2 cut(s)	215, 243
XspI	CTAG	2 cut(s)	170, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.