Rh7CG343500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000951
Physical Location & Seq
Forward (+)
38645993 .. 38647407
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG343500.1

Sequence Viewer

Length: 318 bp
ATGGGCCTCCCAGTGAAGCTTGAGAGTTCTTCCTTGTGTGTGGTACCCTCAGATTCACAGCAAAGTACTCCACCACCACTGGAATCGCAACCATCCTCATTGCCGACGCCCCCGCACAAAGGCAGAGGCAGAGGCAGAGCCACCCGAAAATGCCAAATCGGTTCAGTCGACGACGATGTCAGGGTTAATCTAGAAAGGGTTTTCGCCCTATCTTGGCCAAACTCCGACTTTATCCTCGAGGCCTTGAGGACAGAACGACAACAATTCGCCGAGGAATTGCAACGCCGCAAGATTCGGATTCTAATGTCTATGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.84

Weight (kDa)

9.68

Isoelectric Point (pI)

68.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AbsI CCTCGAGG 1 cut(s) 236
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 168
AciI CCGC 3 cut(s) 113, 286, 313
AcoI YGGCCR 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 45, 67
AfiI CCNNNNNNNGG 2 cut(s) 119, 213
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 4, 215, 240
Asp718I GGTACC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 236
BalI TGGCCA 1 cut(s) 217
BanI GGYRCC 1 cut(s) 43
BccI CCATC 1 cut(s) 100
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 5
BmuI ACTGGG 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 41, 265
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 213
Bse1I ACTGG 2 cut(s) 11, 84
Bse3DI GCAATG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 119, 213
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 11, 84
BshFI GGCC 3 cut(s) 6, 217, 242
BshNI GGYRCC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 119, 213
BsnI GGCC 3 cut(s) 6, 217, 242
BsoBI CYCGRG 1 cut(s) 236
BspACI CCGC 3 cut(s) 113, 286, 313
BspANI GGCC 3 cut(s) 6, 217, 242
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 11, 84
BssECI CCNNGG 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 92
BsuRI GGCC 3 cut(s) 6, 217, 242
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 18, 77
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 44, 66
CviJI RGCY 5 cut(s) 6, 19, 140, 217, 242
CviKI_1 RGCY 5 cut(s) 6, 19, 140, 217, 242
CviQI GTAC 2 cut(s) 44, 66
DdeI CTNAG 1 cut(s) 49
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 236
FaiI YATR 1 cut(s) 311
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 6, 217, 242
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 4 cut(s) 53, 83, 292, 298
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 52, 226, 297
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 3 cut(s) 109, 173, 176
HpyCH4V TGCA 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 107
KpnI GGTACC 1 cut(s) 47
LpnPI CCDG 3 cut(s) 24, 65, 166
MaeI CTAG 1 cut(s) 191
MboII GAAGA 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 217
MluCI AATT 2 cut(s) 263, 275
MluNI TGGCCA 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 9 cut(s) 17, 58, 106, 119, 125, 232, 240, 245, 265
Mox20I TGGCCA 1 cut(s) 217
MscI TGGCCA 1 cut(s) 217
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 4 cut(s) 53, 83, 292, 298
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 2 cut(s) 45, 67
RsaNI GTAC 2 cut(s) 44, 66
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 67
SetI ASST 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 3 cut(s) 20, 236, 244
SmoI CTYRAG 3 cut(s) 20, 236, 244
Sse9I AATT 2 cut(s) 263, 275
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 3 cut(s) 113, 286, 313
SspMI CTAG 1 cut(s) 191
StuI AGGCCT 1 cut(s) 242
TaqI TCGA 2 cut(s) 168, 237
TasI AATT 2 cut(s) 263, 275
TatI WGTACW 1 cut(s) 65
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 4 cut(s) 53, 83, 292, 298
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 18, 84
TspRI CASTG 2 cut(s) 18, 84
Tth111I GACNNNGTC 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.