Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001539.1

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Forward (+)

13506 .. 13832

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001539.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgccagcttttccgacccatttatgcattgcttttctgtgccctataatatctgcttgcgtcatgagtaaggttgatgacggctcgtgtccaatcgggtcggagtcttatcggactccgtctccgtttaatcggagcaattcgtcgatttgcttccgaccgcgcagagctgctacccctgccctaaaatcccaacccggatttctcgatgacgtactctctgtcctagattccgagtttgttctcgaggccctcaggacagaacgcgaaaaattcgcagaagaattgcaacgccagaagatccgtactctaatgtccatgcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.11

Weight (kDa)

8.36

Isoelectric Point (pI)

73.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	163, 267
AciI	CCGC	2 cut(s)	161, 322
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	2 cut(s)	216, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	2 cut(s)	8, 170
AluI	AGCT	2 cut(s)	8, 170
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bse21I	CCTNAGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	163, 267
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	161, 322
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	163, 267
BspHI	TCATGA	1 cut(s)	63
BspPI	GGATC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	27
BssMI	GATC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	6, 58
BstDEI	CTNAG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	163, 267
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	300
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	163, 267
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	6, 58
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	215, 306
CviAII	CATG	2 cut(s)	64, 319
CviJI	RGCY	4 cut(s)	8, 84, 170, 251
CviKI_1	RGCY	4 cut(s)	8, 84, 170, 251
CviQI	GTAC	2 cut(s)	215, 306
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	2 cut(s)	67, 322
FaiI	YATR	4 cut(s)	25, 47, 65, 320
FatI	CATG	2 cut(s)	63, 318
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	67, 322
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	104, 115, 230
HpaII	CCGG	1 cut(s)	198
Hpy188I	TCNGA	6 cut(s)	15, 103, 114, 135, 158, 235
Hpy188III	TCNNGA	4 cut(s)	64, 206, 245, 256
Hpy99I	CGWCG	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	27, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	67, 322
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	18, 192, 211, 241, 308
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	2 cut(s)	293, 310
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	139, 272, 284
MlyI	GAGTC	2 cut(s)	109, 113
MmeI	TCCRAC	3 cut(s)	38, 81, 181
MnlI	CCTC	2 cut(s)	241, 263
Mph1103I	ATGCAT	1 cut(s)	29
MseI	TTAA	1 cut(s)	129
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	163, 267
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	67, 322
NsiI	ATGCAT	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	245
PagI	TCATGA	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	109, 112
PpsI	GAGTC	2 cut(s)	109, 112
PspPI	GGNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	300
PsyI	GACNNNGTC	1 cut(s)	118
RsaI	GTAC	2 cut(s)	216, 307
RsaNI	GTAC	2 cut(s)	215, 306
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	109, 113
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	4 cut(s)	10, 75, 172, 216
Sfr274I	CTCGAG	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	139, 272, 284
SsiI	CCGC	2 cut(s)	161, 322
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	146, 207, 246
TasI	AATT	3 cut(s)	139, 272, 284
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	1 cut(s)	170
TspGWI	ACGGA	3 cut(s)	108, 114, 293
Tth111I	GACNNNGTC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.