FvH4_6g41910

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000951
Physical Location & Seq
Reverse (-)
32818634 .. 32823520
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41910.t1

Sequence Viewer

Length: 1335 bp
ATGGGGAGATGCCAACTCAAGATCTGTGATCGGTGCCTCAAGAAAAGATATGACGGAAGTGTAGATGGTACTGTTATCACAGAAGAGGAGGCTTCTGCGGATGATTGGAAGTGTATGAAATGCAGGGGGAAATGCAACTGCAGTGTGTGCAAGTTGCGAGCCGGTCAAAAACCTCATGGTCGAGTTGTGCCAGCAAATCCTTCTGTGGAGGAGCCTGCGGAAGGGTCTGAGCCAAAGGGAAAGAGGAAGGCCAAGGCTCCTAAGGAACCCCGTAAAGTGAAGGCAAAGGAGGAAGTAGTTGGCCCTGAACTTCCTCTGCCTTTGGGGGTTCCTTTAACAACTGTTGCGGGCATTGAACTACATCCTCAGGATGTAGGACATACCCTACAGTTTATACAGTTCTGCGTGGCCTTTGAAGAGGTTTTTGGATTCAGCAAAGCACAAGCTGAATCTCTTCTCAGAGACCTAGTGCTTCAACAGTACACCTCCGTATTTCAATTCCACGCCAGACTCTTATCTGTACAGGAGGTGGAATTAAAAGAAGAAATCAGGCCTTTGAACAAAGATTCCTGGTTTGAACATTTGAGGTGCTACTTCTCTGAGTCTCAACTCCTACTAAAGGAACTGCCCTCAGATTTCTTTAGTAGAGGAGTTGAGGGGTACCACTCCTTGGACTTCTCCCAGAAGCTTAGAGTCCTGAATTTCCTTTGTGATGAGGCTCTTGACACTGAAAAACTGAGCAAATTTATAGAAAGCCAAGAAGGAATATTCACTCAGAGTAAGAAAGAAGCAAACCAAAAAGTTTCTGCTGCAAAGGCTAAGGAGCTAAGTCTCAAAGGGGAGCTGAAAACTGAGGTGGCCAAGATCAAGGCCATTGCTTCAGAAGAAAATGCTGCTTCATCTTCAGATCACGAAACTACAATTTCGCGATTAAAGAGTGAAGTAGCTCAAGCTCATGCAGAATTGCTTCAAGCCAAAGCCTTGAAATCAAAATTGATAGCACATGATTCAATACGAACAGAGCCTTATCTGTTCGATGAAAATGGTCATGCGTTTTGGAGATTGACAGGCTATGATGCTGGAAAGGATATGTTGCTTCAAGATGTGGGAACTTGGGATCCATTTACATCATCTGATGAAAAGTGGTTCCTGTATGGAGAAGAAAAGAAAGAAGCTGTAGAAAAATACTGCTCTTCTGTAAGGACTAGAAAGCTTATGAATGAAAACCTGTCTCAAACACTTCCTTCAAGTTCTGGAAGTACGGATGAAGAGAAGCTTGAAAATGGGAGTACTGGAGGCGAAGAAGGCATAGCCAAAAGTAGTGCAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

445

Amino Acids

49.61

Weight (kDa)

5.76

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 4 - 63 3.9e-10 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 2 cut(s) 33, 660
AccB7I CCANNNNNTGG 1 cut(s) 670
AccII CGCG 1 cut(s) 928
AciI CCGC 3 cut(s) 98, 218, 347
AclWI GGATC 2 cut(s) 1112, 1125
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 2 cut(s) 700, 743
AcuI CTGAAG 2 cut(s) 864, 888
AfaI GTAC 6 cut(s) 70, 482, 522, 662, 1261, 1291
AfiI CCNNNNNNNGG 3 cut(s) 221, 619, 670
AjnI CCWGG 1 cut(s) 569
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AloI GAACNNNNNNTCC 4 cut(s) 551, 583, 1102, 1134
AluBI AGCT 9 cut(s) 446, 688, 826, 844, 947, 953, 1175, 1213, 1276
AluI AGCT 9 cut(s) 446, 688, 826, 844, 947, 953, 1175, 1213, 1276
Alw26I GTCTC 4 cut(s) 456, 609, 836, 1236
AlwI GGATC 2 cut(s) 1112, 1125
AoxI GGCC 6 cut(s) 249, 301, 408, 551, 858, 870
ApeKI GCWGC 2 cut(s) 809, 893
ApoI RAATTY 2 cut(s) 700, 743
Asp700I GAANNNNTTC 2 cut(s) 453, 966
Asp718I GGTACC 1 cut(s) 660
AspS9I GGNCC 1 cut(s) 302
AxyI CCTNAGG 2 cut(s) 261, 366
BalI TGGCCA 1 cut(s) 860
BamHI GGATCC 1 cut(s) 1117
BanI GGYRCC 2 cut(s) 33, 660
BbvI GCAGC 2 cut(s) 796, 880
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 571
BcoDI GTCTC 4 cut(s) 456, 609, 836, 1236
BfaI CTAG 2 cut(s) 467, 1206
BfmI CTRYAG 3 cut(s) 139, 386, 1176
BglII AGATCT 1 cut(s) 21
BisI GCNGC 2 cut(s) 810, 894
BlsI GCNGC 2 cut(s) 811, 895
BmcAI AGTACT 1 cut(s) 1291
Bme1390I CCNGG 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 8 cut(s) 35, 213, 258, 267, 330, 662, 1119, 1148
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 1066
BpmI CTGGAG 1 cut(s) 1314
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 23, 933
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 252, 669
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 619, 670
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 1297
Bse21I CCTNAGG 2 cut(s) 261, 366
Bse3DI GCAATG 1 cut(s) 873
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 2 cut(s) 252, 669
BseGI GGATG 4 cut(s) 106, 361, 376, 1270
BseLI CCNNNNNNNGG 3 cut(s) 221, 619, 670
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 8 cut(s) 219, 380, 472, 591, 645, 728, 788, 843
BseNI ACTGG 1 cut(s) 1297
BseRI GAGGAG 3 cut(s) 101, 224, 663
BseXI GCAGC 2 cut(s) 796, 880
Bsh1236I CGCG 1 cut(s) 928
BshFI GGCC 6 cut(s) 251, 303, 410, 553, 860, 872
BshNI GGYRCC 2 cut(s) 33, 660
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 3 cut(s) 221, 619, 670
BsmAI GTCTC 4 cut(s) 456, 609, 836, 1236
BsnI GGCC 6 cut(s) 251, 303, 410, 553, 860, 872
Bso31I GGTCTC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 5 cut(s) 21, 28, 864, 907, 1117
Bsp68I TCGCGA 1 cut(s) 928
BspACI CCGC 3 cut(s) 98, 218, 347
BspANI GGCC 6 cut(s) 251, 303, 410, 553, 860, 872
BspCNI CTCAG 8 cut(s) 220, 379, 471, 592, 644, 729, 787, 844
BspFNI CGCG 1 cut(s) 928
BspLI GGNNCC 8 cut(s) 35, 213, 258, 267, 330, 662, 1119, 1148
BspMAI CTGCAG 1 cut(s) 143
BspPI GGATC 2 cut(s) 1112, 1125
BspQI GCTCTTC 1 cut(s) 1198
BspT107I GGYRCC 2 cut(s) 33, 660
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 1 cut(s) 1297
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 252, 669
BssMI GATC 5 cut(s) 21, 28, 864, 907, 1117
BssT1I CCWWGG 2 cut(s) 252, 669
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 5 cut(s) 73, 343, 390, 399, 480
Bst6I CTCTTC 6 cut(s) 78, 411, 459, 1198, 1263, 1323
BstAPI GCANNNNNTGC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 4 cut(s) 159, 192, 216, 349
BstENI CCTNNNNNAGG 2 cut(s) 219, 617
BstF5I GGATG 4 cut(s) 106, 361, 376, 1270
BstFNI CGCG 1 cut(s) 928
BstKTI GATC 5 cut(s) 24, 31, 867, 910, 1120
BstMAI GTCTC 4 cut(s) 456, 609, 836, 1236
BstMBI GATC 5 cut(s) 21, 28, 864, 907, 1117
BstMWI GCNNNNNNNGC 3 cut(s) 147, 815, 1305
BstNI CCWGG 1 cut(s) 571
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 3 cut(s) 139, 386, 1176
BstUI CGCG 1 cut(s) 928
BstV1I GCAGC 2 cut(s) 796, 880
BstX2I RGATCY 2 cut(s) 21, 1117
BstYI RGATCY 2 cut(s) 21, 1117
Bsu36I CCTNAGG 2 cut(s) 261, 366
BsuRI GGCC 6 cut(s) 251, 303, 410, 553, 860, 872
BtsCI GGATG 4 cut(s) 106, 361, 376, 1270
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 726
BtuMI TCGCGA 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 159, 192, 216, 349
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 6 cut(s) 69, 481, 521, 661, 1260, 1290
CviAII CATG 4 cut(s) 176, 956, 1004, 1049
CviQI GTAC 6 cut(s) 69, 481, 521, 661, 1260, 1290
DpnI GATC 5 cut(s) 23, 30, 866, 909, 1119
DpnII GATC 5 cut(s) 21, 28, 864, 907, 1117
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 6 cut(s) 78, 411, 459, 1198, 1263, 1323
EarI CTCTTC 6 cut(s) 78, 411, 459, 1198, 1263, 1323
Eco130I CCWWGG 2 cut(s) 252, 669
Eco147I AGGCCT 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 864, 888
Eco81I CCTNAGG 2 cut(s) 261, 366
EcoNI CCTNNNNNAGG 2 cut(s) 219, 617
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 2 cut(s) 252, 669
ErhI CCWWGG 2 cut(s) 252, 669
FaeI CATG 4 cut(s) 179, 959, 1007, 1052
FalI AAGNNNNNCTT 2 cut(s) 1260, 1292
FatI CATG 4 cut(s) 175, 955, 1003, 1048
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 810, 894
FokI GGATG 4 cut(s) 113, 348, 383, 1277
Fsp4HI GCNGC 2 cut(s) 810, 894
FspBI CTAG 2 cut(s) 467, 1206
GluI GCNGC 2 cut(s) 810, 894
GsuI CTGGAG 1 cut(s) 1314
HaeIII GGCC 6 cut(s) 251, 303, 410, 553, 860, 872
HapII CCGG 1 cut(s) 162
Hin1II CATG 4 cut(s) 179, 959, 1007, 1052
HindIII AAGCTT 3 cut(s) 686, 1211, 1274
HinfI GANTC 7 cut(s) 429, 449, 510, 566, 602, 693, 1007
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 8 cut(s) 229, 461, 601, 634, 777, 883, 907, 1135
Hpy188III TCNNGA 9 cut(s) 19, 40, 368, 697, 722, 911, 927, 1100, 1254
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 7 cut(s) 210, 215, 241, 274, 755, 1254, 1298
HpyCH4III ACNGT 5 cut(s) 73, 343, 390, 399, 480
HpyCH4V TGCA 7 cut(s) 123, 135, 141, 150, 812, 959, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 815, 1305
Hsp92II CATG 4 cut(s) 179, 959, 1007, 1052
KpnI GGTACC 1 cut(s) 664
Kzo9I GATC 5 cut(s) 21, 28, 864, 907, 1117
LguI GCTCTTC 1 cut(s) 1198
LmnI GCTCC 4 cut(s) 211, 262, 823, 841
Lsp1109I GCAGC 2 cut(s) 796, 880
LweI GCATC 1 cut(s) 1066
MaeI CTAG 2 cut(s) 467, 1206
MalI GATC 5 cut(s) 23, 30, 866, 909, 1119
MboI GATC 5 cut(s) 21, 28, 864, 907, 1117
MflI RGATCY 2 cut(s) 21, 1117
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 7 cut(s) 497, 533, 700, 743, 921, 962, 992
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 3 cut(s) 504, 611, 702
Mox20I TGGCCA 1 cut(s) 860
MroXI GAANNNNTTC 2 cut(s) 453, 966
MscI TGGCCA 1 cut(s) 860
MseI TTAA 3 cut(s) 335, 536, 932
Msp20I TGGCCA 1 cut(s) 860
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 571
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 928
MwoI GCNNNNNNNGC 3 cut(s) 147, 815, 1305
NdeII GATC 5 cut(s) 21, 28, 864, 907, 1117
NlaIII CATG 4 cut(s) 179, 959, 1007, 1052
NlaIV GGNNCC 8 cut(s) 35, 213, 258, 267, 330, 662, 1119, 1148
NruI TCGCGA 1 cut(s) 928
PceI AGGCCT 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 1198
PdmI GAANNNNTTC 2 cut(s) 453, 966
PfeI GAWTC 4 cut(s) 429, 449, 566, 1007
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 2 cut(s) 811, 895
PleI GAGTC 3 cut(s) 504, 610, 701
PpsI GAGTC 3 cut(s) 504, 610, 701
Psp6I CCWGG 1 cut(s) 569
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 8 cut(s) 35, 213, 258, 267, 330, 662, 1119, 1148
PspPI GGNCC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 143
PsuI RGATCY 2 cut(s) 21, 1117
RruI TCGCGA 1 cut(s) 928
RsaI GTAC 6 cut(s) 70, 482, 522, 662, 1261, 1291
RsaNI GTAC 6 cut(s) 69, 481, 521, 661, 1260, 1290
SapI GCTCTTC 1 cut(s) 1198
SaqAI TTAA 3 cut(s) 335, 536, 932
SatI GCNGC 2 cut(s) 810, 894
Sau3AI GATC 5 cut(s) 21, 28, 864, 907, 1117
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 1291
SchI GAGTC 3 cut(s) 504, 611, 702
ScrFI CCNGG 1 cut(s) 571
SfaNI GCATC 1 cut(s) 1066
SfcI CTRYAG 3 cut(s) 139, 386, 1176
SmlI CTYRAG 3 cut(s) 17, 38, 948
SmoI CTYRAG 3 cut(s) 17, 38, 948
Sse9I AATT 7 cut(s) 497, 533, 700, 743, 921, 962, 992
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 3 cut(s) 98, 218, 347
SspI AATATT 1 cut(s) 768
SspMI CTAG 2 cut(s) 467, 1206
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 2 cut(s) 252, 669
TaaI ACNGT 5 cut(s) 73, 343, 390, 399, 480
TaqI TCGA 2 cut(s) 181, 1035
TasI AATT 7 cut(s) 497, 533, 700, 743, 921, 962, 992
TatI WGTACW 3 cut(s) 480, 520, 1289
TfiI GAWTC 4 cut(s) 429, 449, 566, 1007
Tru1I TTAA 3 cut(s) 335, 536, 932
Tru9I TTAA 3 cut(s) 335, 536, 932
TscAI CASTG 2 cut(s) 148, 733
TseI GCWGC 2 cut(s) 809, 893
TspDTI ATGAA 7 cut(s) 131, 888, 1053, 1152, 1232, 1236, 1281
TspGWI ACGGA 3 cut(s) 69, 478, 1277
TspRI CASTG 2 cut(s) 148, 733
Van91I CCANNNNNTGG 1 cut(s) 670
XagI CCTNNNNNAGG 2 cut(s) 219, 617
XapI RAATTY 2 cut(s) 700, 743
XmnI GAANNNNTTC 2 cut(s) 453, 966
XspI CTAG 2 cut(s) 467, 1206
ZrmI AGTACT 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.