Rh7AG324200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000951
Physical Location & Seq
Reverse (-)
36745065 .. 36748171
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG324200.1

Sequence Viewer

Length: 615 bp
ATGTCTCAACACGATCAATTGGCTACTCCACCTCCACCGCCCTTGGTATCGCCGCAATCCTCATCGCCGGCGATTTGTTTCCCATTGCCGCGCCGAGTCTCCTCAAAATCCAAAATCGGTTCTGTGGATGACATCGCGGTTGATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTTTGCTTGAGGCTCTGAGGAGAGAACGCCAAGAATTTGCGGAGGAGTTGCAGCGCCGCAAAATTCGCACGTTAATGTCTATGCGGGTGCTAGGAAAGGCTCTGTTTCTCAGGTTTGGAATGCACAATAAAGCATGGGTTGCCTTTCCCAGAGGTTTCAACATTCAAAGACTGAGGGTTGCAGACTTGGTTGATTGGTCTTCAACTTCTTGGAATCTGGATCCCATTGCTCAGCATTTGACACCTGCTGTGGTTGTTGCTATTGAGTCCATCCCATTGTCCTCTACTTGGGAACCTGATAAGTTAGTCTGGCCTTTTGAGAAATGTGGTTCATATTCAGTCAGGTCTGGGTATCATGTGCAGCATGGAGGGAGAAAACTCTTTGAAGGATGGCTTATGCAACTGATACAAGAATCAAAGTTTGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

204

Amino Acids

23.29

Weight (kDa)

9.26

Isoelectric Point (pI)

64.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccII CGCG 2 cut(s) 91, 137
AciI CCGC 7 cut(s) 38, 53, 89, 137, 224, 241, 268
AclWI GGATC 2 cut(s) 398, 411
AcsI RAATTY 2 cut(s) 218, 246
AfiI CCNNNNNNNGG 2 cut(s) 168, 471
AgsI TTSAA 5 cut(s) 343, 350, 387, 569, 608
Alw26I GTCTC 2 cut(s) 9, 103
AlwI GGATC 2 cut(s) 398, 411
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 235, 544
ApoI RAATTY 2 cut(s) 218, 246
AspLEI GCGC 2 cut(s) 93, 240
BamHI GGATCC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 247, 556
BccI CCATC 2 cut(s) 461, 567
BcoDI GTCTC 2 cut(s) 9, 103
BfaI CTAG 2 cut(s) 173, 275
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 5 cut(s) 53, 89, 236, 241, 545
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 5 cut(s) 54, 90, 237, 242, 546
BmiI GGNNCC 2 cut(s) 405, 477
BpiI GAAGAC 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 471
Bse118I RCCGGY 1 cut(s) 67
Bse3DI GCAATG 2 cut(s) 83, 408
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 3 cut(s) 133, 453, 578
BseLI CCNNNNNNNGG 2 cut(s) 168, 471
BseMI GCAATG 2 cut(s) 83, 408
BseMII CTCAG 4 cut(s) 191, 307, 347, 428
BseRI GAGGAG 3 cut(s) 91, 217, 242
BseXI GCAGC 2 cut(s) 247, 556
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 2 cut(s) 91, 137
BshFI GGCC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 168, 471
BsmAI GTCTC 2 cut(s) 9, 103
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 496
Bsp143I GATC 3 cut(s) 13, 142, 403
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 7 cut(s) 38, 53, 89, 137, 224, 241, 268
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 4 cut(s) 192, 306, 348, 427
BspFNI CGCG 2 cut(s) 91, 137
BspLI GGNNCC 2 cut(s) 405, 477
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 2 cut(s) 398, 411
BsrDI GCAATG 2 cut(s) 83, 408
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 13, 142, 403
BssT1I CCWWGG 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 200, 293, 356, 414
BstF5I GGATG 3 cut(s) 133, 453, 578
BstFNI CGCG 2 cut(s) 91, 137
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 93, 240
BstKTI GATC 3 cut(s) 16, 145, 406
BstMAI GTCTC 2 cut(s) 9, 103
BstMBI GATC 3 cut(s) 13, 142, 403
BstMWI GCNNNNNNNGC 2 cut(s) 249, 323
BstUI CGCG 2 cut(s) 91, 137
BstV1I GCAGC 2 cut(s) 247, 556
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 496
BtgZI GCGATG 2 cut(s) 48, 118
BtsCI GGATG 3 cut(s) 133, 453, 578
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 2 cut(s) 93, 240
Cfr10I RCCGGY 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 3 cut(s) 318, 539, 548
CviJI RGCY 6 cut(s) 23, 172, 197, 284, 496, 577
CviKI_1 RGCY 6 cut(s) 23, 172, 197, 284, 496, 577
DdeI CTNAG 4 cut(s) 200, 293, 356, 414
DpnI GATC 3 cut(s) 15, 144, 405
DpnII GATC 3 cut(s) 13, 142, 403
Eco130I CCWWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 321, 542, 551
FaiI YATR 6 cut(s) 266, 319, 517, 540, 549, 581
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FatI CATG 3 cut(s) 317, 538, 547
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 5 cut(s) 53, 89, 236, 241, 545
FokI GGATG 3 cut(s) 140, 440, 585
Fsp4HI GCNGC 5 cut(s) 53, 89, 236, 241, 545
FspBI CTAG 2 cut(s) 173, 275
GlaI GCGC 2 cut(s) 92, 239
GluI GCNGC 5 cut(s) 53, 89, 236, 241, 545
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 1 cut(s) 496
HapII CCGG 1 cut(s) 68
HhaI GCGC 2 cut(s) 93, 240
Hin1II CATG 3 cut(s) 321, 542, 551
Hin6I GCGC 2 cut(s) 91, 238
HinP1I GCGC 2 cut(s) 91, 238
HinfI GANTC 5 cut(s) 96, 176, 397, 449, 596
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 181, 201, 614
Hpy188III TCNNGA 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 5 cut(s) 235, 307, 365, 544, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 323
HpyF3I CTNAG 4 cut(s) 200, 293, 356, 414
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 3 cut(s) 321, 542, 551
HspAI GCGC 2 cut(s) 91, 238
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 13, 142, 403
LpnPI CCDG 9 cut(s) 81, 280, 346, 386, 441, 478, 492, 511, 516
Lsp1109I GCAGC 2 cut(s) 247, 556
MaeI CTAG 2 cut(s) 173, 275
MaeII ACGT 1 cut(s) 254
MalI GATC 3 cut(s) 15, 144, 405
MboI GATC 3 cut(s) 13, 142, 403
MboII GAAGA 1 cut(s) 375
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 1 cut(s) 403
MluCI AATT 3 cut(s) 17, 218, 246
MlyI GAGTC 3 cut(s) 105, 170, 458
MreI CGCCGGCG 1 cut(s) 67
MroNI GCCGGC 1 cut(s) 67
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 309
MvnI CGCG 2 cut(s) 91, 137
MwoI GCNNNNNNNGC 2 cut(s) 249, 323
NaeI GCCGGC 1 cut(s) 69
NdeII GATC 3 cut(s) 13, 142, 403
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 3 cut(s) 321, 542, 551
NlaIV GGNNCC 2 cut(s) 405, 477
NmeAIII GCCGAG 1 cut(s) 119
PaqCI CACCTGC 1 cut(s) 436
PctI GAATGC 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 397, 596
PkrI GCNGC 5 cut(s) 54, 90, 237, 242, 546
PleI GAGTC 3 cut(s) 104, 170, 457
PpsI GAGTC 3 cut(s) 104, 170, 457
PspN4I GGNNCC 2 cut(s) 405, 477
PsuI RGATCY 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 5 cut(s) 53, 89, 236, 241, 545
Sau3AI GATC 3 cut(s) 13, 142, 403
SchI GAGTC 3 cut(s) 105, 170, 458
SetI ASST 7 cut(s) 34, 257, 299, 340, 430, 481, 530
SgrAI CRCCGGYG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 17, 218, 246
SsiI CCGC 7 cut(s) 38, 53, 89, 137, 224, 241, 268
SspMI CTAG 2 cut(s) 173, 275
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 1 cut(s) 257
TasI AATT 3 cut(s) 17, 218, 246
TauI GCSGC 3 cut(s) 55, 91, 243
TfiI GAWTC 2 cut(s) 397, 596
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 2 cut(s) 235, 544
TspDTI ATGAA 1 cut(s) 504
XapI RAATTY 2 cut(s) 218, 246
XspI CTAG 2 cut(s) 173, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.