Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Forward (+)

32178454 .. 32179997

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGTTTAGCTTGCCCAGCAAGGTTTCTGGATCTCATGGTGTTGGTCTCTACCCATCTCATTTATCTTTACCTTTTAGGTTCTCTGCCTAGAAAGTACCATGTTGCGGAATTGATTTCGAGGGTCAGGAATTCCCTACCCCCTTCAAAAGTTCAGCAATTGTCGAATCTGGTAAATGGTTCAAAGGCTGGGAAGTTAGCAAGAAATGATTTCTGCAGGCAGTTTCGATTAGTTGTTGGGGAGCGGTTGCTGCGTTCTGCAATTCCTGAGATGCGTGGCTCGGAACAAGGTTCTACTTTGGTTTTATTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0010015 GO:0010101 GO:0010102 GO:0010154 GO:0010228 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST WWE

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

10.36

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RST	PF12174	36 - 91	1.1e-10	RCD1-SRO-TAF4 (RST) plant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	2 cut(s)	107, 244
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	147, 183
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	90, 313
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
BmsI	GCATC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	2 cut(s)	16, 188
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	107, 244
BspCNI	CTCAG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	244
BssMI	GATC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	13, 218
BstDEI	CTNAG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 250
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	13, 218
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	37, 101
CviJI	RGCY	3 cut(s)	11, 188, 279
CviKI_1	RGCY	3 cut(s)	11, 188, 279
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	40, 104
FaiI	YATR	2 cut(s)	38, 102
FatI	CATG	2 cut(s)	36, 100
Fnu4HI	GCNGC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	2 cut(s)	90, 313
GluI	GCNGC	1 cut(s)	251
GsaI	CCCAGC	2 cut(s)	20, 192
Hin1II	CATG	2 cut(s)	40, 104
HinfI	GANTC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	3 cut(s)	29, 127, 266
HpyAV	CCTTC	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	216, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 250
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	40, 104
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	14, 30, 112, 155, 174, 202, 279
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	2 cut(s)	90, 313
MalI	GATC	1 cut(s)	33
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	4 cut(s)	110, 130, 158, 261
MnlI	CCTC	1 cut(s)	114
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	17, 250
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	40, 104
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	252
PspFI	CCCAGC	2 cut(s)	16, 188
PstI	CTGCAG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	5 cut(s)	13, 26, 75, 82, 292
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	214
Sse9I	AATT	4 cut(s)	110, 130, 158, 261
SsiI	CCGC	2 cut(s)	107, 244
SspMI	CTAG	2 cut(s)	90, 313
TaqI	TCGA	3 cut(s)	119, 164, 226
TasI	AATT	4 cut(s)	110, 130, 158, 261
TfiI	GAWTC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	2 cut(s)	90, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.