Rh7BG316100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000951
Physical Location & Seq
Reverse (-)
30531938 .. 30532228
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG316100.1

Sequence Viewer

Length: 291 bp
ATGAGTAAGGTTGATGACGGGTCGTCTCCAATCGGGTCGGAGTCTTATCGGACTCCGTCTCCGTTTAATCGGAGCAATTCGTCGATTTGCTTCCGACCGCCCGGAGCTGCTGCCCCTGCCCTAAAATCCCAACCCGGATTTCTCGATGACGTGGCTGTCAATCTCAATAGGGTTTTCGTACTCTCTGTCCTAGATTCCGAGTTTGTTCTCGAGGCCCTCAGGACAGAACGCAAAAAATTCGCAAAAGAATTGCAACGCCAGAAGATTCGTACTCTAATGTCCATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.66

Weight (kDa)

9.65

Isoelectric Point (pI)

62.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AciI CCGC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 180, 271
AhdI GACNNNNNGTC 1 cut(s) 22
AjiI CACGTC 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 30, 63
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 2 cut(s) 102, 135
AvaI CYCGRG 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 218
BbvI GCAGC 2 cut(s) 94, 97
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BcnI CCSGG 2 cut(s) 102, 135
BcoDI GTCTC 2 cut(s) 30, 63
BfaI CTAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 108, 111
BlsI GCNGC 2 cut(s) 109, 112
Bme1390I CCNGG 2 cut(s) 102, 135
BmeRI GACNNNNNGTC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 102, 135
BpuMI CCSGG 2 cut(s) 102, 135
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse21I CCTNAGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 94, 97
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 102, 135
BsmAI GTCTC 2 cut(s) 30, 63
BsmBI CGTCTC 2 cut(s) 30, 63
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 209
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 30, 63
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 100, 133
BstV1I GCAGC 2 cut(s) 94, 97
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 1 cut(s) 215
BtrI CACGTC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 179, 270
CviAII CATG 1 cut(s) 283
CviJI RGCY 3 cut(s) 107, 155, 215
CviKI_1 RGCY 3 cut(s) 107, 155, 215
CviQI GTAC 2 cut(s) 179, 270
DdeI CTNAG 1 cut(s) 218
DrdI GACNNNNNNGTC 1 cut(s) 155
DriI GACNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 214
Esp3I CGTCTC 2 cut(s) 30, 63
FaeI CATG 1 cut(s) 286
FaiI YATR 1 cut(s) 284
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 108, 111
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 1 cut(s) 191
GluI GCNGC 2 cut(s) 108, 111
HaeIII GGCC 1 cut(s) 215
HapII CCGG 2 cut(s) 102, 135
Hin1II CATG 1 cut(s) 286
HinfI GANTC 4 cut(s) 41, 52, 194, 265
HpaII CCGG 2 cut(s) 102, 135
Hpy188I TCNGA 5 cut(s) 40, 51, 72, 95, 199
Hpy188III TCNNGA 3 cut(s) 143, 209, 220
Hpy99I CGWCG 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 253, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 286
LmnI GCTCC 2 cut(s) 72, 104
LpnPI CCDG 5 cut(s) 115, 129, 148, 205, 272
Lsp1109I GCAGC 2 cut(s) 94, 97
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 150
MboII GAAGA 1 cut(s) 274
MluCI AATT 3 cut(s) 76, 236, 248
MlyI GAGTC 2 cut(s) 46, 50
MmeI TCCRAC 2 cut(s) 18, 118
MnlI CCTC 2 cut(s) 205, 227
MseI TTAA 1 cut(s) 66
MspI CCGG 2 cut(s) 102, 135
MspR9I CCNGG 2 cut(s) 102, 135
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 2 cut(s) 102, 135
NlaIII CATG 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 209
PfeI GAWTC 2 cut(s) 194, 265
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 109, 112
PleI GAGTC 2 cut(s) 46, 49
PpsI GAGTC 2 cut(s) 46, 49
PspPI GGNCC 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 2 cut(s) 180, 271
RsaNI GTAC 2 cut(s) 179, 270
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 108, 111
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 46, 50
ScrFI CCNGG 2 cut(s) 102, 135
SetI ASST 3 cut(s) 12, 109, 153
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 3 cut(s) 76, 236, 248
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 100, 133
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 83, 144, 210
TasI AATT 3 cut(s) 76, 236, 248
TfiI GAWTC 2 cut(s) 194, 265
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 2 cut(s) 107, 110
TspGWI ACGGA 2 cut(s) 45, 51
Tth111I GACNNNGTC 1 cut(s) 55
XapI RAATTY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.