Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

31674459 .. 31674914

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG280000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCAGCTGGCATCCATCTGACTCTCCTCTTACCTATATATTCTGAGCCTGAGGAGAGAGAATCTCCTCCACTTCTCACAACTCTCACCCTCTCTGACCCTCTCTCAGTTTCTCCGACCCATTTCTGCATTGCTTTTCTGTGCCCTATGATATCTGCTTGCGTCATGAGTACGGTTGATGACGGGTCGTCTCCAATCGGGTCGGAGTCTTATCGGACTCCGTCTCCGTTTAATTGGATCAATTTGTCGATTTGCTTCCGACCGCGCAGAGCTGCTGCCCCTGCCCTAAAATCCCAACCCGGATTTCTCGATGACGTGGCCGTCAATCTCAGTGGGGTTTTCGTACTCTCTGTTCTAGATTCCGAGTTTGTTCTCGAGGCCCTCAGGACAGAACGCGAAAAATTCGCAGAAGAATTGCAACGCCAGAAGATCCGTACTCTAATGTCCATGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

5.15

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccII	CGCG	2 cut(s)	265, 396
AciI	CCGC	2 cut(s)	263, 451
AclWI	GGATC	2 cut(s)	245, 424
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	3 cut(s)	172, 345, 436
AhdI	GACNNNNNGTC	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	2 cut(s)	8, 272
AluI	AGCT	2 cut(s)	8, 272
Alw26I	GTCTC	2 cut(s)	195, 228
AlwI	GGATC	2 cut(s)	245, 424
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	318, 378
ApeKI	GCWGC	2 cut(s)	272, 275
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	379
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	374
AxyI	CCTNAGG	2 cut(s)	51, 383
BaeGI	GKGCMC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	259, 262
BccI	CCATC	1 cut(s)	24
BceAI	ACGGC	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	195, 228
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	273, 276
BlsI	GCNGC	2 cut(s)	274, 277
Bme1390I	CCNGG	1 cut(s)	300
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpuMI	CCSGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bse21I	CCTNAGG	2 cut(s)	51, 383
Bse3DI	GCAATG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	5 cut(s)	36, 42, 120, 343, 397
BseRI	GAGGAG	3 cut(s)	17, 57, 68
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	259, 262
Bsh1236I	CGCG	2 cut(s)	265, 396
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	320, 380
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	195, 228
BsmBI	CGTCTC	2 cut(s)	195, 228
BsnI	GGCC	2 cut(s)	320, 380
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	237, 429
BspACI	CCGC	2 cut(s)	263, 451
BspANI	GGCC	2 cut(s)	320, 380
BspCNI	CTCAG	5 cut(s)	37, 43, 119, 342, 396
BspFNI	CGCG	2 cut(s)	265, 396
BspHI	TCATGA	1 cut(s)	165
BspPI	GGATC	2 cut(s)	245, 424
BsrDI	GCAATG	1 cut(s)	129
BssMI	GATC	2 cut(s)	237, 429
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	6, 10, 160
BstDEI	CTNAG	5 cut(s)	45, 51, 106, 329, 383
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	2 cut(s)	265, 396
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	240, 432
BstMAI	GTCTC	2 cut(s)	195, 228
BstMBI	GATC	2 cut(s)	237, 429
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	146
BstUI	CGCG	2 cut(s)	265, 396
BstV1I	GCAGC	2 cut(s)	259, 262
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
Bsu36I	CCTNAGG	2 cut(s)	51, 383
BsuRI	GGCC	2 cut(s)	320, 380
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	6, 10, 160
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	379
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	171, 344, 435
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	2 cut(s)	166, 448
CviJI	RGCY	5 cut(s)	8, 49, 272, 320, 380
CviKI_1	RGCY	5 cut(s)	8, 49, 272, 320, 380
CviQI	GTAC	3 cut(s)	171, 344, 435
DdeI	CTNAG	5 cut(s)	45, 51, 106, 329, 383
DpnI	GATC	2 cut(s)	239, 431
DpnII	GATC	2 cut(s)	237, 429
DrdI	GACNNNNNNGTC	1 cut(s)	320
DriI	GACNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	153
Eco81I	CCTNAGG	2 cut(s)	51, 383
Eco88I	CYCGRG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	153
Esp3I	CGTCTC	2 cut(s)	195, 228
FaeI	CATG	2 cut(s)	169, 451
FaiI	YATR	5 cut(s)	38, 40, 149, 167, 449
FatI	CATG	2 cut(s)	165, 447
Fnu4HI	GCNGC	2 cut(s)	273, 276
Fsp4HI	GCNGC	2 cut(s)	273, 276
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	273, 276
HaeIII	GGCC	2 cut(s)	320, 380
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	169, 451
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	5 cut(s)	22, 62, 206, 217, 359
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	8 cut(s)	21, 46, 97, 117, 205, 216, 260, 364
Hpy188III	TCNNGA	5 cut(s)	166, 308, 356, 374, 385
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	129, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	5 cut(s)	45, 51, 106, 329, 383
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	169, 451
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	237, 429
LpnPI	CCDG	6 cut(s)	18, 63, 294, 313, 370, 437
Lsp1109I	GCAGC	2 cut(s)	259, 262
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	239, 431
MboI	GATC	2 cut(s)	237, 429
MboII	GAAGA	2 cut(s)	422, 439
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	4 cut(s)	232, 241, 401, 413
MlyI	GAGTC	3 cut(s)	16, 211, 215
MmeI	TCCRAC	3 cut(s)	140, 183, 283
MnlI	CCTC	7 cut(s)	38, 46, 78, 101, 111, 370, 392
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	300
MvnI	CGCG	2 cut(s)	265, 396
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	237, 429
NlaIII	CATG	2 cut(s)	169, 451
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	62, 359
PflFI	GACNNNGTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	274, 277
PleI	GAGTC	3 cut(s)	16, 211, 214
PpsI	GAGTC	3 cut(s)	16, 211, 214
PspPI	GGNCC	1 cut(s)	379
PsrI	GAACNNNNNNTAC	2 cut(s)	336, 368
PsuI	RGATCY	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	3 cut(s)	172, 345, 436
RsaNI	GTAC	3 cut(s)	171, 344, 435
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	273, 276
Sau3AI	GATC	2 cut(s)	237, 429
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	3 cut(s)	16, 211, 215
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	4 cut(s)	10, 37, 274, 318
SfaNI	GCATC	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	232, 241, 401, 413
SsiI	CCGC	2 cut(s)	263, 451
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	248, 309, 375
TasI	AATT	4 cut(s)	232, 241, 401, 413
TfiI	GAWTC	2 cut(s)	62, 359
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	2 cut(s)	272, 275
TspGWI	ACGGA	3 cut(s)	210, 216, 422
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	355
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.