Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

36524916 .. 36534737

Gene Structure 9822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG181200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGGAAACGCCAATGCAAGATCAAGATCTGCGAGCGATGCCTCAAGAAAAGATATGTAGATATCATAGAAGAGGCGGCTGCTTCAGATGATTGGAAGTGTCCGAAATGCTGCGGGATCTGCAACTGCAGTGTGTGCATGAAGCGAGAGGGTAAAGAACCTCTTGGTCGAGTTGTGCCTGACTCAGAGAAGCCTTCAGAGGAGGACCCTGCGGAAGTGGCTGAGCCAAATGAAGAAGAAGAAAACCATAGAGAAGATGTTGGCAAGGGCAAGTGGAAGGCCAAGGCTCCGAGGGAACCCCGCAGAGTGAAGGCGAAGGAAGAAGTAGTTGAGCCGGAACTTCCTCTACCTTTTGGGGTTCCCTTAACAACTGTTGCGGGCATTGAACTACATCCTCAGGATGTAGGACATGCCCTACAGTTTATAGACTTCTGTGTGTCCCTTGAAGAGGTTCTTAAGTTCAGCAAAGAAGACGCTGAATCTCTTCTCAGAGACCTAATGCATCAACAATACTCCTCAGTATTTCGATTCCAGAAAGCCAAAAAGACATATTCCATCGAAGCAAGATCACAGCAAAACGAACAGTATCTGCTGCGAAGGCTAAGAATTCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT WHIM1 zf-4CXXC_R1

Protein Analysis

205

Amino Acids

23.71

Weight (kDa)

7.5

Isoelectric Point (pI)

67.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	4 - 61	1e-16	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	77, 114, 212, 301, 377
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	69, 180
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	386, 446
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	3 cut(s)	80, 111, 592
ApoI	RAATTY	1 cut(s)	606
Asp700I	GAANNNNTTC	2 cut(s)	450, 483
AspS9I	GGNCC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	67, 98, 579
BccI	CCATC	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	127, 416
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	4 cut(s)	78, 81, 112, 593
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	4 cut(s)	79, 82, 113, 594
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	4 cut(s)	207, 288, 297, 360
BmsI	GCATC	2 cut(s)	29, 511
BpiI	GAAGAC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	282, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse21I	CCTNAGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	282, 290
BseGI	GGATG	2 cut(s)	391, 406
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	5 cut(s)	198, 213, 410, 502, 531
BseRI	GAGGAG	2 cut(s)	215, 505
BseXI	GCAGC	3 cut(s)	67, 98, 579
BshFI	GGCC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	21, 27, 117, 566
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	5 cut(s)	77, 114, 212, 301, 377
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	5 cut(s)	197, 214, 409, 501, 530
BspLI	GGNNCC	4 cut(s)	207, 288, 297, 360
BspMAI	CTGCAG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	282, 290
BssMI	GATC	4 cut(s)	21, 27, 117, 566
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	373, 420, 585
Bst6I	CTCTTC	3 cut(s)	66, 441, 489
BstAFI	CTTAAG	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	35, 379
BstDEI	CTNAG	7 cut(s)	184, 222, 396, 488, 517, 602, 611
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	391, 406
BstKTI	GATC	4 cut(s)	24, 30, 120, 569
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	4 cut(s)	21, 27, 117, 566
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 120, 135, 218, 598
BstNSI	RCATGY	1 cut(s)	413
BstSFI	CTRYAG	2 cut(s)	127, 416
BstV1I	GCAGC	3 cut(s)	67, 98, 579
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	27, 117
BstYI	RGATCY	2 cut(s)	27, 117
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	391, 406
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	35, 379
CaiI	CAGNNNCTG	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	482
CviAII	CATG	2 cut(s)	139, 410
CviJI	RGCY	9 cut(s)	80, 193, 221, 226, 281, 287, 334, 539, 601
CviKI_1	RGCY	9 cut(s)	80, 193, 221, 226, 281, 287, 334, 539, 601
DdeI	CTNAG	7 cut(s)	184, 222, 396, 488, 517, 602, 611
DpnI	GATC	4 cut(s)	23, 29, 119, 568
DpnII	GATC	4 cut(s)	21, 27, 117, 566
Eam1104I	CTCTTC	3 cut(s)	66, 441, 489
EarI	CTCTTC	3 cut(s)	66, 441, 489
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	69, 180
Eco81I	CCTNAGG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	606
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	142, 413
FaiI	YATR	7 cut(s)	57, 68, 140, 249, 411, 425, 550
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 438, 470
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	138, 409
FauI	CCCGC	3 cut(s)	107, 308, 370
Fnu4HI	GCNGC	4 cut(s)	78, 81, 112, 593
FokI	GGATG	2 cut(s)	378, 413
Fsp4HI	GCNGC	4 cut(s)	78, 81, 112, 593
GluI	GCNGC	4 cut(s)	78, 81, 112, 593
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	142, 413
HinfI	GANTC	3 cut(s)	182, 479, 528
HpaII	CCGG	1 cut(s)	335
Hpy188I	TCNGA	6 cut(s)	88, 105, 187, 199, 291, 491
Hpy188III	TCNNGA	4 cut(s)	25, 46, 398, 532
HpyAV	CCTTC	5 cut(s)	204, 271, 304, 310, 591
HpyCH4III	ACNGT	3 cut(s)	373, 420, 585
HpyCH4V	TGCA	5 cut(s)	18, 123, 129, 138, 502
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 120, 135, 218, 598
HpyF3I	CTNAG	7 cut(s)	184, 222, 396, 488, 517, 602, 611
Hsp92II	CATG	2 cut(s)	142, 413
Kzo9I	GATC	4 cut(s)	21, 27, 117, 566
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	5 cut(s)	192, 222, 348, 383, 545
Lsp1109I	GCAGC	3 cut(s)	67, 98, 579
LweI	GCATC	2 cut(s)	29, 511
MalI	GATC	4 cut(s)	23, 29, 119, 568
MboI	GATC	4 cut(s)	21, 27, 117, 566
MboII	GAAGA	9 cut(s)	83, 245, 248, 251, 266, 332, 458, 476, 482
MflI	RGATCY	2 cut(s)	27, 117
MluCI	AATT	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	504
MroXI	GAANNNNTTC	2 cut(s)	450, 483
MseI	TTAA	2 cut(s)	365, 456
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	5 cut(s)	39, 120, 135, 218, 598
NdeII	GATC	4 cut(s)	21, 27, 117, 566
NlaIII	CATG	2 cut(s)	142, 413
NlaIV	GGNNCC	4 cut(s)	207, 288, 297, 360
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	413
PdmI	GAANNNNTTC	2 cut(s)	450, 483
PfeI	GAWTC	2 cut(s)	479, 528
PkrI	GCNGC	4 cut(s)	79, 82, 113, 594
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	207, 288, 297, 360
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
PstI	CTGCAG	1 cut(s)	131
PstNI	CAGNNNCTG	1 cut(s)	589
PsuI	RGATCY	2 cut(s)	27, 117
SaqAI	TTAA	2 cut(s)	365, 456
SatI	GCNGC	4 cut(s)	78, 81, 112, 593
Sau3AI	GATC	4 cut(s)	21, 27, 117, 566
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	176
SetI	ASST	4 cut(s)	163, 352, 453, 498
SfaNI	GCATC	2 cut(s)	29, 511
SfcI	CTRYAG	2 cut(s)	127, 416
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	44, 455
SmoI	CTYRAG	2 cut(s)	44, 455
Sse9I	AATT	1 cut(s)	606
SsiI	CCGC	5 cut(s)	77, 114, 212, 301, 377
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	373, 420, 585
TaqI	TCGA	3 cut(s)	169, 526, 558
TasI	AATT	1 cut(s)	606
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	479, 528
Tru1I	TTAA	2 cut(s)	365, 456
Tru9I	TTAA	2 cut(s)	365, 456
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	3 cut(s)	80, 111, 592
TspDTI	ATGAA	2 cut(s)	155, 246
TspRI	CASTG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	606
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	2 cut(s)	450, 483
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.