Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

75121258 .. 75127053

Gene Structure 5796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG542900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCCGGAGAAGGAGTATTCTGTCACCAGTGCCGCCAAAGGACCACGAAACGTGTGTTCTTGTGCAACAATGTCATGGGGAAACGCCAATGCAAGATCAAGATCTGCAAGCGGTGCCTCAAGGAAAGGAAGCGAGTAGGTAAAGAACCTCTTGGTCGAGCTGTGCCTGAATCAGAGAATCCTTCAGAGGAGGTTTCGCATAGCTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT WHIM1 zf-4CXXC_R1

Protein Analysis

70

Amino Acids

8.02

Weight (kDa)

9.62

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	4 - 44	6.3e-07	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	2 cut(s)	34, 112
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	52
AluBI	AGCT	2 cut(s)	161, 204
AluI	AGCT	2 cut(s)	161, 204
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	101
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	101
BseJI	GATNNNNATC	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	6
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	96, 102
BspACI	CCGC	2 cut(s)	34, 112
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	96, 102
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	99, 105
BstMBI	GATC	2 cut(s)	96, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	42
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	3 cut(s)	5, 161, 204
CviKI_1	RGCY	3 cut(s)	5, 161, 204
DpnI	GATC	2 cut(s)	98, 104
DpnII	GATC	2 cut(s)	96, 102
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	168
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 201, 208
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	2 cut(s)	170, 178
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	2 cut(s)	175, 187
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	5, 192
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	66, 93, 108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	96, 102
LpnPI	CCDG	3 cut(s)	19, 41, 180
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	98, 104
MboI	GATC	2 cut(s)	96, 102
MflI	RGATCY	1 cut(s)	102
MnlI	CCTC	4 cut(s)	128, 159, 181, 184
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	2 cut(s)	96, 102
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	170, 178
PkrI	GCNGC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	102
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	96, 102
Sau96I	GGNCC	1 cut(s)	42
SetI	ASST	6 cut(s)	55, 142, 151, 163, 195, 206
SinI	GGWCC	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SsiI	CCGC	2 cut(s)	34, 112
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	157
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	170, 178
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.