Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Forward (+)

27492458 .. 27494315

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1211400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAATAGACACGTTCTTCCCGAGTGTGTTGTGACCTACAAATCGAATTACGTGCCAGCTCAATTGGGAGGTTCGGCGCGAAGAGCTTACCCTGTAGATATGTTAATTTCGAAGATTCAGAGCTACCTTCCTCCTTCTAAAGTTCAGGAACTGTCCTCTCTGGTTTGCGCGTTGAAGGGTGGAAAGTTGGCGAGAGATGATTTCGTCAAAAAGTGTAGATCAGTTACTGGGGAGCAATTGATGGCATCTGCTCTTAACAACTTGCGTCTCCAGAAGCAAGGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0010015 GO:0010101 GO:0010102 GO:0010154 GO:0010228 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST WWE

Protein Analysis

96

Amino Acids

10.45

Weight (kDa)

9.76

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RST	PF12174	31 - 89	5e-11	RCD1-SRO-TAF4 (RST) plant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	79, 170
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	3 cut(s)	59, 86, 123
AluI	AGCT	3 cut(s)	59, 86, 123
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	2 cut(s)	151, 227
Ama87I	CYCGRG	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	79, 170
AsuII	TTCGAA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	20
BccI	CCATC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BcoDI	GTCTC	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	232
Bsh1236I	CGCG	2 cut(s)	79, 170
BsiHKCI	CYCGRG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	218
BspFNI	CGCG	2 cut(s)	79, 170
BspQI	GCTCTTC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	285
BstFNI	CGCG	2 cut(s)	79, 170
BstHHI	GCGC	2 cut(s)	79, 170
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	2 cut(s)	79, 170
Cac8I	GCNNGC	1 cut(s)	57
CaiI	CAGNNNCTG	2 cut(s)	151, 227
CfoI	GCGC	2 cut(s)	79, 170
CseI	GACGC	1 cut(s)	254
CviJI	RGCY	3 cut(s)	59, 86, 123
CviKI_1	RGCY	3 cut(s)	59, 86, 123
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	272
FaiI	YATR	1 cut(s)	101
GlaI	GCGC	2 cut(s)	78, 169
GsuI	CTGGAG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	79, 170
Hin6I	GCGC	2 cut(s)	77, 168
HinP1I	GCGC	2 cut(s)	77, 168
HinfI	GANTC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	20, 146, 271
HpyAV	CCTTC	3 cut(s)	137, 144, 169
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	12, 51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	12, 51
HspAI	GCGC	2 cut(s)	77, 168
Kzo9I	GATC	1 cut(s)	218
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	6 cut(s)	69, 105, 131, 146, 213, 284
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	2 cut(s)	12, 51
MaeIII	GTNAC	2 cut(s)	31, 223
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	3 cut(s)	8, 93, 124
MfeI	CAATTG	2 cut(s)	62, 236
MluCI	AATT	4 cut(s)	46, 62, 105, 236
MnlI	CCTC	3 cut(s)	62, 141, 166
MseI	TTAA	2 cut(s)	104, 255
MunI	CAATTG	2 cut(s)	62, 236
MvnI	CGCG	2 cut(s)	79, 170
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	52
PstNI	CAGNNNCTG	2 cut(s)	151, 227
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	104, 255
Sau3AI	GATC	1 cut(s)	218
SetI	ASST	9 cut(s)	15, 38, 54, 61, 73, 88, 125, 129, 283
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	110
Sse9I	AATT	4 cut(s)	46, 62, 105, 236
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	2 cut(s)	15, 54
TaqI	TCGA	2 cut(s)	44, 110
TasI	AATT	4 cut(s)	46, 62, 105, 236
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	104, 255
Tru9I	TTAA	2 cut(s)	104, 255
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.