Rorug07G0290600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000951
Physical Location & Seq
Forward (+)
28308872 .. 28313091
4220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0290600.1

Sequence Viewer

Length: 1887 bp
ATGAATGAACTTGCCTCAAAGTCTGAGACCTCTGGAAATTTTGAATTGCCTTCTGGTCCAAGATGTCAAGAAAATATAATGTCTAAAAGCATAGAAGGGTCAAATCAACAAAGCCACTTACCTGAGGAGACAATGCCCATAGAACCATATGCTGAACAGACAATACATGATCTGCCTGCTGAACTTGTAGGAGGAGTTGATTTGAATGGGGATGCTAGTGTAGACGGAAAGAATGGTGGCTGTCCTCAGATCAAAAAAGTAAATATCATTTCAAGTGGAAAAGAAGCTGTTAATGACAAAATGATGATAGAAGATGGTCCTAATCATGAAGACTTTCCTTTTAAAAATTCATCTCCATTAGATATTGGTAGATTGGGGAGCAGTTATGGTGATAGGAGCATGTCAGACAGTGATACTTTGACAGAAAATGATGAACCAGCTAAAGGTGATTTAGATAATGGAGAGACTTTGGCTTCAGTGGTCTCCAGGAAGACACCGCACAACATCAACAGTATCAAGGGAACCCAAAACTCAAGTTTAAAGCTTCCATTGTCTACACAGGCCAGTGAATCTACAGTTGATAAAGTTACGCTGAGAAAGGAAAGCAGGGCTGGAGAACTCTGCTCAAAGATTTCTAGGGGATTGGAAAACACTGGACCTCAGTTGTATCAACCGCCATTAATAGGAGGAAAATCTCTCTCGTCTGGAAACAACAAAGTTGGTTCCATGTATATAAGCCCTGCACTTGAGAAAGGGGTGGGTGTCAATGCTAATGCTGCACAATATGGAACCAAATTGCTCACTACCCCGGTGTTAGTTGATAAAGAAACAAAAGTCAGACCTGTAATACCTGGAAGGGAGGGCTCTGAATCTGACGGTGTACCAAAAGAGACCAAACTAGTTGGGGATCCACAGCTGTGTTACAAACAAGTAACAGAAAGGGAACCTGTAGTAGGAAGTGAGCAGAGAAAAAATCCTAAAGATCTCAGGGTTCAAGTGAGTTCTTCCAGCTCAACTGATAAGACAAGAAAACATAGTAGTCAAAGTGTCAAACCTAAGATCATGCTCCCAAGCGTGGAGCCAATAAGGAAATCAAAGATCATTACTGCTGAAGGGAATAAACATGGTCCTGACAAACCTGCACAGAAGAAAACCGACATCTCAACCTGGAAAATATCCAAGAATATTGGTGGCAATAAACCTTTTTTGAATGCTCCACCTCAAAAAGAAGTTAAAACCCAGAGGAGTTCAGAGCAAAACAAGGATCTGCATTGCAATGTGGAATTGAAAACTAGGCAGATTGTTGATGGCAGTGAAAAAATGCCACAAAACCTTTCCCTGAAACGAAAAGCATTTGAGGGATTAAATCCAGGTTTAGCATCCTTGAAGCCTCTAAAACGCCTCTCTCTGTCGCCAAGAGAAACCAGAAATTTCACAGAACCTTCAAAAGGAACTGTTGAACAGGTTTGCATTCGTGAGAACCATTTGGAGATCAAGACTAAGAGCCCAAGCTCTAGAGTTGGTAGAATGGTGAATGTGATGGAACTTGAATTTACTTCAGCAATGGAGACTGGTGAAAATGTTGAAAAGGCTGAAGCATATACCAAGGAGCTTGAAGATATATGCAATATACTGAAAAAGAAACATGAGGAAGCCAAAGAAATGCTTGTAAGAGCTGTTGTGAACAACAATAATCTACTGATGCTTAACCATCCCATCTATGAAGCCAAGATATCCTTTAAAAGTTTTTTAGCTGTTATTGTGTTGTCTTTTTGTCTGCCATTTTGGTATAAAAATAAAGTTGAACATTCCTTCACAACTGAGAACATTCATAAAGTTCAGAAACTTGCTGCTACACTGGCATACAAGGAACTTCAAGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

628

Amino Acids

68.99

Weight (kDa)

8.74

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1147
AccI GTMKAC 2 cut(s) 222, 554
AciI CCGC 2 cut(s) 497, 674
AclWI GGATC 3 cut(s) 902, 915, 1272
AcsI RAATTY 4 cut(s) 37, 346, 1429, 1550
AcuI CTGAAG 4 cut(s) 459, 1131, 1542, 1614
AfaI GTAC 1 cut(s) 882
AfiI CCNNNNNNNGG 5 cut(s) 443, 683, 953, 1075, 1448
AhlI ACTAGT 1 cut(s) 898
AjnI CCWGG 4 cut(s) 485, 850, 1166, 1369
AleI CACNNNNGTG 1 cut(s) 916
AluBI AGCT 9 cut(s) 287, 440, 544, 916, 1011, 1512, 1612, 1676, 1754
AluI AGCT 9 cut(s) 287, 440, 544, 916, 1011, 1512, 1612, 1676, 1754
Alw26I GTCTC 6 cut(s) 20, 122, 458, 487, 884, 1562
AlwI GGATC 3 cut(s) 902, 915, 1272
AoxI GGCC 1 cut(s) 561
ApeKI GCWGC 2 cut(s) 776, 1850
ApoI RAATTY 4 cut(s) 37, 346, 1429, 1550
AseI ATTAAT 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 4 cut(s) 56, 317, 656, 1127
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 4 cut(s) 401, 458, 1543, 1586
AvaII GGWCC 4 cut(s) 56, 317, 656, 1127
AxyI CCTNAGG 1 cut(s) 123
BamHI GGATCC 1 cut(s) 907
BanII GRGCYC 2 cut(s) 866, 1508
BbsI GAAGAC 2 cut(s) 336, 497
BbvI GCAGC 2 cut(s) 763, 1837
BccI CCATC 5 cut(s) 308, 1301, 1534, 1719, 1724
BciT130I CCWGG 4 cut(s) 487, 852, 1168, 1371
BcnI CCSGG 1 cut(s) 809
BcoDI GTCTC 6 cut(s) 20, 122, 458, 487, 884, 1562
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 5 cut(s) 216, 636, 899, 1293, 1515
BfmI CTRYAG 2 cut(s) 573, 948
BfuAI ACCTGC 1 cut(s) 1147
BglII AGATCT 1 cut(s) 982
BisI GCNGC 2 cut(s) 777, 1851
BlsI GCNGC 2 cut(s) 778, 1852
Bme1390I CCNGG 5 cut(s) 487, 809, 852, 1168, 1371
Bme18I GGWCC 4 cut(s) 56, 317, 656, 1127
BmgT120I GGNCC 4 cut(s) 56, 317, 656, 1127
BmiI GGNNCC 6 cut(s) 523, 724, 790, 909, 945, 1080
BmrFI CCNGG 5 cut(s) 487, 809, 852, 1168, 1371
BmsI GCATC 3 cut(s) 202, 1388, 1692
BpiI GAAGAC 2 cut(s) 336, 497
BpmI CTGGAG 2 cut(s) 469, 633
BpuEI CTTGAG 2 cut(s) 517, 767
BpuMI CCSGG 1 cut(s) 809
BsaI GGTCTC 3 cut(s) 20, 487, 884
BsaJI CCNNGG 2 cut(s) 807, 1605
Bsc4I CCNNNNNNNGG 5 cut(s) 443, 683, 953, 1075, 1448
Bse1I ACTGG 4 cut(s) 564, 658, 1576, 1863
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 3 cut(s) 1270, 1282, 1569
BseBI CCWGG 4 cut(s) 487, 852, 1168, 1371
BseDI CCNNGG 2 cut(s) 807, 1605
BseGI GGATG 3 cut(s) 217, 1379, 1711
BseLI CCNNNNNNNGG 5 cut(s) 443, 683, 953, 1075, 1448
BseMI GCAATG 3 cut(s) 1270, 1282, 1569
BseMII CTCAG 7 cut(s) 15, 114, 260, 584, 674, 1000, 1812
BseNI ACTGG 4 cut(s) 564, 658, 1576, 1863
BseRI GAGGAG 3 cut(s) 140, 207, 1258
BseXI GCAGC 2 cut(s) 763, 1837
BsgI GTGCAG 3 cut(s) 726, 762, 1125
BshFI GGCC 1 cut(s) 563
BsiSI CCGG 1 cut(s) 809
BslI CCNNNNNNNGG 5 cut(s) 443, 683, 953, 1075, 1448
BsmAI GTCTC 6 cut(s) 20, 122, 458, 487, 884, 1562
BsmI GAATGC 2 cut(s) 1216, 1470
BsnI GGCC 1 cut(s) 563
Bso31I GGTCTC 3 cut(s) 20, 487, 884
Bsp1286I GDGCHC 2 cut(s) 866, 1508
Bsp143I GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
BspACI CCGC 2 cut(s) 497, 674
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 7 cut(s) 16, 115, 259, 585, 673, 999, 1813
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 6 cut(s) 523, 724, 790, 909, 945, 1080
BspMI ACCTGC 1 cut(s) 1147
BspPI GGATC 3 cut(s) 902, 915, 1272
BspTNI GGTCTC 3 cut(s) 20, 487, 884
BsrDI GCAATG 3 cut(s) 1270, 1282, 1569
BsrI ACTGG 4 cut(s) 564, 658, 1576, 1863
BssECI CCNNGG 2 cut(s) 807, 1605
BssMI GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
BssT1I CCWWGG 1 cut(s) 1605
Bst2UI CCWGG 4 cut(s) 487, 852, 1168, 1371
Bst4CI ACNGT 5 cut(s) 410, 512, 577, 878, 1456
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 9 cut(s) 24, 123, 246, 593, 660, 986, 1056, 1500, 1821
BstENI CCTNNNNNAGG 2 cut(s) 951, 1446
BstF5I GGATG 3 cut(s) 217, 1379, 1711
BstKTI GATC 8 cut(s) 172, 252, 910, 985, 1062, 1101, 1267, 1494
BstMAI GTCTC 6 cut(s) 20, 122, 458, 487, 884, 1562
BstMBI GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
BstMWI GCNNNNNNNGC 2 cut(s) 776, 1859
BstNI CCWGG 4 cut(s) 487, 852, 1168, 1371
BstNSI RCATGY 2 cut(s) 403, 1884
BstSCI CCNGG 5 cut(s) 485, 807, 850, 1166, 1369
BstSFI CTRYAG 2 cut(s) 573, 948
BstV1I GCAGC 2 cut(s) 763, 1837
BstV2I GAAGAC 2 cut(s) 336, 497
BstX2I RGATCY 3 cut(s) 907, 982, 1264
BstYI RGATCY 3 cut(s) 907, 982, 1264
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 563
BtsCI GGATG 3 cut(s) 217, 1379, 1711
BtsI GCAGTG 1 cut(s) 1318
BtsIMutI CAGTG 6 cut(s) 415, 483, 571, 651, 1318, 1856
BveI ACCTGC 1 cut(s) 1147
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 4 cut(s) 56, 317, 656, 1127
Csp6I GTAC 1 cut(s) 881
CviAII CATG 8 cut(s) 167, 326, 400, 727, 1063, 1124, 1646, 1881
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 9 cut(s) 24, 123, 246, 593, 660, 986, 1056, 1500, 1821
DpnI GATC 8 cut(s) 171, 251, 909, 984, 1061, 1100, 1266, 1493
DpnII GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
DraI TTTAAA 3 cut(s) 343, 540, 1741
Eco130I CCWWGG 1 cut(s) 1605
Eco24I GRGCYC 2 cut(s) 866, 1508
Eco31I GGTCTC 3 cut(s) 20, 487, 884
Eco32I GATATC 1 cut(s) 1734
Eco47I GGWCC 4 cut(s) 56, 317, 656, 1127
Eco57I CTGAAG 4 cut(s) 459, 1131, 1542, 1614
Eco81I CCTNAGG 1 cut(s) 123
EcoNI CCTNNNNNAGG 2 cut(s) 951, 1446
EcoRII CCWGG 4 cut(s) 485, 850, 1166, 1369
EcoRV GATATC 1 cut(s) 1734
EcoT14I CCWWGG 1 cut(s) 1605
EcoT38I GRGCYC 2 cut(s) 866, 1508
ErhI CCWWGG 1 cut(s) 1605
FaeI CATG 8 cut(s) 170, 329, 403, 730, 1066, 1127, 1649, 1884
FalI AAGNNNNNCTT 4 cut(s) 1650, 1682, 1721, 1753
FatI CATG 8 cut(s) 166, 325, 399, 726, 1062, 1123, 1645, 1880
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 2 cut(s) 222, 554
Fnu4HI GCNGC 2 cut(s) 777, 1851
FokI GGATG 3 cut(s) 224, 1366, 1698
FriOI GRGCYC 2 cut(s) 866, 1508
Fsp4HI GCNGC 2 cut(s) 777, 1851
FspBI CTAG 5 cut(s) 216, 636, 899, 1293, 1515
GluI GCNGC 2 cut(s) 777, 1851
GsuI CTGGAG 2 cut(s) 469, 633
HaeIII GGCC 1 cut(s) 563
HapII CCGG 1 cut(s) 809
Hin1II CATG 8 cut(s) 170, 329, 403, 730, 1066, 1127, 1649, 1884
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 2 cut(s) 569, 869
HpaII CCGG 1 cut(s) 809
HphI GGTGA 4 cut(s) 401, 458, 1543, 1586
Hpy166II GTNNAC 4 cut(s) 223, 555, 881, 1684
Hpy188I TCNGA 8 cut(s) 25, 249, 406, 839, 868, 874, 1252, 1842
Hpy188III TCNNGA 8 cut(s) 33, 68, 326, 705, 1130, 1475, 1495, 1515
Hpy8I GTNNAC 4 cut(s) 223, 555, 881, 1684
HpyAV CCTTC 6 cut(s) 60, 89, 849, 1106, 1452, 1822
HpyCH4III ACNGT 5 cut(s) 410, 512, 577, 878, 1456
HpyCH4V TGCA 7 cut(s) 743, 779, 1142, 1270, 1275, 1470, 1626
HpyF10VI GCNNNNNNNGC 2 cut(s) 776, 1859
HpyF3I CTNAG 9 cut(s) 24, 123, 246, 593, 660, 986, 1056, 1500, 1821
Hsp92II CATG 8 cut(s) 170, 329, 403, 730, 1066, 1127, 1649, 1884
Kzo9I GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
LmnI GCTCC 6 cut(s) 378, 396, 1071, 1078, 1219, 1609
Lsp1109I GCAGC 2 cut(s) 763, 1837
LweI GCATC 3 cut(s) 202, 1388, 1692
MaeI CTAG 5 cut(s) 216, 636, 899, 1293, 1515
MaeIII GTNAC 3 cut(s) 586, 920, 931
MalI GATC 8 cut(s) 171, 251, 909, 984, 1061, 1100, 1266, 1493
MboI GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
MboII GAAGA 6 cut(s) 323, 341, 502, 996, 1159, 1628
MflI RGATCY 3 cut(s) 907, 982, 1264
MhlI GDGCHC 2 cut(s) 866, 1508
MluCI AATT 7 cut(s) 37, 44, 346, 794, 1283, 1429, 1550
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 8 cut(s) 291, 342, 539, 680, 1233, 1364, 1707, 1740
MslI CAYNNNNRTG 2 cut(s) 916, 1275
MspA1I CMGCKG 1 cut(s) 916
MspI CCGG 1 cut(s) 809
MspR9I CCNGG 5 cut(s) 487, 809, 852, 1168, 1371
Mva1269I GAATGC 2 cut(s) 1216, 1470
MvaI CCWGG 4 cut(s) 487, 852, 1168, 1371
MwoI GCNNNNNNNGC 2 cut(s) 776, 1859
NciI CCSGG 1 cut(s) 809
NdeI CATATG 1 cut(s) 148
NdeII GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
NlaIII CATG 8 cut(s) 170, 329, 403, 730, 1066, 1127, 1649, 1884
NlaIV GGNNCC 6 cut(s) 523, 724, 790, 909, 945, 1080
NspI RCATGY 2 cut(s) 403, 1884
OliI CACNNNNGTG 1 cut(s) 916
PagI TCATGA 1 cut(s) 325
PctI GAATGC 2 cut(s) 1216, 1470
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 569, 869
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 2 cut(s) 778, 1852
PshBI ATTAAT 1 cut(s) 680
Psp6I CCWGG 4 cut(s) 485, 850, 1166, 1369
PspGI CCWGG 4 cut(s) 485, 850, 1166, 1369
PspN4I GGNNCC 6 cut(s) 523, 724, 790, 909, 945, 1080
PspPI GGNCC 4 cut(s) 56, 317, 656, 1127
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 3 cut(s) 907, 982, 1264
PvuII CAGCTG 1 cut(s) 916
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
RseI CAYNNNNRTG 2 cut(s) 916, 1275
SaqAI TTAA 8 cut(s) 291, 342, 539, 680, 1233, 1364, 1707, 1740
SatI GCNGC 2 cut(s) 777, 1851
Sau3AI GATC 8 cut(s) 169, 249, 907, 982, 1059, 1098, 1264, 1491
Sau96I GGNCC 4 cut(s) 56, 317, 656, 1127
ScrFI CCNGG 5 cut(s) 487, 809, 852, 1168, 1371
SduI GDGCHC 2 cut(s) 866, 1508
SfaNI GCATC 3 cut(s) 202, 1388, 1692
SfcI CTRYAG 2 cut(s) 573, 948
SinI GGWCC 4 cut(s) 56, 317, 656, 1127
SmiMI CAYNNNNRTG 2 cut(s) 916, 1275
SmlI CTYRAG 2 cut(s) 532, 746
SmoI CTYRAG 2 cut(s) 532, 746
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 7 cut(s) 37, 44, 346, 794, 1283, 1429, 1550
SsiI CCGC 2 cut(s) 497, 674
SspI AATATT 1 cut(s) 1186
SspMI CTAG 5 cut(s) 216, 636, 899, 1293, 1515
StyD4I CCNGG 5 cut(s) 485, 807, 850, 1166, 1369
StyI CCWWGG 1 cut(s) 1605
TaaI ACNGT 5 cut(s) 410, 512, 577, 878, 1456
TasI AATT 7 cut(s) 37, 44, 346, 794, 1283, 1429, 1550
TfiI GAWTC 2 cut(s) 569, 869
Tru1I TTAA 8 cut(s) 291, 342, 539, 680, 1233, 1364, 1707, 1740
Tru9I TTAA 8 cut(s) 291, 342, 539, 680, 1233, 1364, 1707, 1740
TscAI CASTG 6 cut(s) 415, 483, 571, 658, 1318, 1863
TseI GCWGC 2 cut(s) 776, 1850
TspDTI ATGAA 7 cut(s) 17, 21, 339, 342, 447, 1737, 1820
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 6 cut(s) 415, 483, 571, 658, 1318, 1863
VpaK11BI GGWCC 4 cut(s) 56, 317, 656, 1127
VspI ATTAAT 1 cut(s) 680
XagI CCTNNNNNAGG 2 cut(s) 951, 1446
XapI RAATTY 4 cut(s) 37, 346, 1429, 1550
XbaI TCTAGA 1 cut(s) 1514
XceI RCATGY 2 cut(s) 403, 1884
XmiI GTMKAC 2 cut(s) 222, 554
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 5 cut(s) 216, 636, 899, 1293, 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.