Rh7BG342200

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000951
Physical Location & Seq
Forward (+)
35699702 .. 35713699
13998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG342200.1

Sequence Viewer

Length: 735 bp
ATGTCTCAACACGATCGCTTGGCTACTCCACCTCCACCTCCACCACCCTTGGTATCGCCGCAATCGCCGATTTGTTTCCCATTGCCGCGCAAAGTCGCAAAGTCCAAAATCGGTTCCGGTTCCGTCGATAACATCGCCGTTGATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTGTGCTTGAGGCTCTGAGGAGAGAACGGAAAGAATTCGCGGAGGAGATGCAGCGCCGCAAAATTCGCACGTTAATGTCTATGCGGGTGGTAGGAAAGGCTCTGTTTCTGAGGTTTGGATTGCACAATAAAGCATGGGTTGCCTTTCCCAGAGGGATTTTGGGTGGGAGACTGCGTGCTGCTCATCTGTATGCTTCTGAGTTTGATCCTTTTCAGAGGGTTGCAGACTTGGTTGATTGGTCTTCAACTTCTTGGAATCTGGATCCCATTGCTCAGCATTTGACACCTGCTGTGGTTGTTGCTATTGAGTCCATCCCATTGTCCTCTACTTGGGAACCTGATAAGTTAGTCTGGCCTTTTGAGAAATGTGGTTCATATTCAGTCAGATGTGTTTCATTGTCCGCCTTTATTCTTGATGGAGGCCTCGTTTCTTCTCAAAAGCTGGTTGCAGAACTCTTTGAAGGATGGCTTATGCAACTGGATCAAGGAGCTCCACCATCAAGCAAAAGAAAGAAACAATTGTCTACTCATTTAGTTGGTTATCATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

244

Amino Acids

27.28

Weight (kDa)

9.48

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 707
AccII CGCG 2 cut(s) 88, 224
AciI CCGC 6 cut(s) 59, 86, 224, 241, 268, 585
AclWI GGATC 4 cut(s) 383, 440, 453, 672
AcsI RAATTY 2 cut(s) 218, 246
AfiI CCNNNNNNNGG 2 cut(s) 168, 513
AgsI TTSAA 2 cut(s) 429, 644
AluBI AGCT 2 cut(s) 625, 674
AluI AGCT 2 cut(s) 625, 674
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 2 cut(s) 9, 346
AlwI GGATC 4 cut(s) 383, 440, 453, 672
AoxI GGCC 2 cut(s) 536, 604
ApeKI GCWGC 2 cut(s) 235, 362
ApoI RAATTY 2 cut(s) 218, 246
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 2 cut(s) 90, 240
BamHI GGATCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 676
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 247, 349
BccI CCATC 4 cut(s) 503, 593, 642, 688
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 9, 346
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 5 cut(s) 59, 86, 236, 241, 363
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 5 cut(s) 60, 87, 237, 242, 364
BmiI GGNNCC 4 cut(s) 115, 121, 447, 519
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 6 cut(s) 16, 46, 343, 373, 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 513
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 2 cut(s) 80, 450
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 495, 653
BseLI CCNNNNNNNGG 2 cut(s) 168, 513
BseMI GCAATG 2 cut(s) 80, 450
BseMII CTCAG 4 cut(s) 191, 284, 372, 470
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 217, 242
BseXI GCAGC 2 cut(s) 247, 349
Bsh1236I CGCG 2 cut(s) 88, 224
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 538, 606
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 168, 513
BsmAI GTCTC 2 cut(s) 9, 346
BsnI GGCC 2 cut(s) 538, 606
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 5 cut(s) 13, 142, 388, 445, 664
Bsp1720I GCTNAGC 1 cut(s) 456
BspACI CCGC 6 cut(s) 59, 86, 224, 241, 268, 585
BspANI GGCC 2 cut(s) 538, 606
BspCNI CTCAG 4 cut(s) 192, 285, 373, 469
BspFNI CGCG 2 cut(s) 88, 224
BspLI GGNNCC 4 cut(s) 115, 121, 447, 519
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 4 cut(s) 383, 440, 453, 672
BsrDI GCAATG 2 cut(s) 80, 450
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 5 cut(s) 13, 142, 388, 445, 664
BssT1I CCWWGG 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 4 cut(s) 200, 293, 381, 456
BstF5I GGATG 2 cut(s) 495, 653
BstFNI CGCG 2 cut(s) 88, 224
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 90, 240
BstKTI GATC 5 cut(s) 16, 145, 391, 448, 667
BstMAI GTCTC 2 cut(s) 9, 346
BstMBI GATC 5 cut(s) 13, 142, 388, 445, 664
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 64, 249, 323
BstUI CGCG 2 cut(s) 88, 224
BstV1I GCAGC 2 cut(s) 247, 349
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 2 cut(s) 538, 606
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 495, 653
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 90, 240
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 1 cut(s) 318
CviJI RGCY 9 cut(s) 23, 172, 197, 284, 538, 606, 625, 652, 674
CviKI_1 RGCY 9 cut(s) 23, 172, 197, 284, 538, 606, 625, 652, 674
DdeI CTNAG 4 cut(s) 200, 293, 381, 456
DpnI GATC 5 cut(s) 15, 144, 390, 447, 666
DpnII GATC 5 cut(s) 13, 142, 388, 445, 664
EciI GGCGGA 1 cut(s) 574
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 321
FaiI YATR 7 cut(s) 266, 319, 375, 559, 656, 729, 733
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 1 cut(s) 317
FauI CCCGC 1 cut(s) 261
FblI GTMKAC 1 cut(s) 707
Fnu4HI GCNGC 5 cut(s) 59, 86, 236, 241, 363
FokI GGATG 2 cut(s) 482, 660
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 5 cut(s) 59, 86, 236, 241, 363
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 89, 239
GluI GCNGC 5 cut(s) 59, 86, 236, 241, 363
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 538, 606
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 90, 240
Hin1II CATG 1 cut(s) 321
Hin6I GCGC 2 cut(s) 88, 238
HinP1I GCGC 2 cut(s) 88, 238
HinfI GANTC 3 cut(s) 176, 439, 491
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 6 cut(s) 181, 201, 294, 382, 399, 569
Hpy188III TCNNGA 2 cut(s) 443, 596
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 638
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 5 cut(s) 235, 307, 407, 632, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 249, 323
HpyF3I CTNAG 4 cut(s) 200, 293, 381, 456
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 1 cut(s) 321
HspAI GCGC 2 cut(s) 88, 238
Kzo9I GATC 5 cut(s) 13, 142, 388, 445, 664
LmnI GCTCC 2 cut(s) 671, 679
LpnPI CCDG 8 cut(s) 130, 346, 428, 483, 520, 534, 611, 647
Lsp1109I GCAGC 2 cut(s) 247, 349
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 254
MalI GATC 5 cut(s) 15, 144, 390, 447, 666
MboI GATC 5 cut(s) 13, 142, 388, 445, 664
MboII GAAGA 2 cut(s) 417, 606
MfeI CAATTG 1 cut(s) 701
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 3 cut(s) 218, 246, 701
MlyI GAGTC 2 cut(s) 170, 500
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 2 cut(s) 257, 372
MspI CCGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 701
MvnI CGCG 2 cut(s) 88, 224
MwoI GCNNNNNNNGC 3 cut(s) 64, 249, 323
NdeII GATC 5 cut(s) 13, 142, 388, 445, 664
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 4 cut(s) 115, 121, 447, 519
PaqCI CACCTGC 1 cut(s) 478
PceI AGGCCT 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 5 cut(s) 60, 87, 237, 242, 364
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 2 cut(s) 170, 499
PpsI GAGTC 2 cut(s) 170, 499
Psp124BI GAGCTC 1 cut(s) 676
PspN4I GGNNCC 4 cut(s) 115, 121, 447, 519
PsuI RGATCY 1 cut(s) 445
PvuI CGATCG 1 cut(s) 16
RseI CAYNNNNRTG 2 cut(s) 257, 372
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 5 cut(s) 59, 86, 236, 241, 363
Sau3AI GATC 5 cut(s) 13, 142, 388, 445, 664
SchI GAGTC 2 cut(s) 170, 500
SduI GDGCHC 1 cut(s) 676
SetI ASST 8 cut(s) 34, 40, 257, 299, 472, 523, 627, 676
SfaNI GCATC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 257, 372
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 218, 246, 701
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 6 cut(s) 59, 86, 224, 241, 268, 585
SspMI CTAG 1 cut(s) 173
SstI GAGCTC 1 cut(s) 676
StuI AGGCCT 1 cut(s) 606
StyI CCWWGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 126
TasI AATT 3 cut(s) 218, 246, 701
TauI GCSGC 3 cut(s) 61, 88, 243
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 2 cut(s) 235, 362
TspDTI ATGAA 2 cut(s) 546, 567
TspGWI ACGGA 2 cut(s) 112, 226
XapI RAATTY 2 cut(s) 218, 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.