Rh7CG294300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000951
Physical Location & Seq
Forward (+)
30057845 .. 30058162
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG294300.1

Sequence Viewer

Length: 318 bp
ATGGGCCTCCCAGTGAAGCTTGAGAGTTCTTCCTTGTGTTTGTTACCCTCAGATTCACGGCAGGGTACTCCACTACCACTGGAATCGCAACCATCCTCATCGCCGACGCCCCCGCGCAGACGCAGAGGCAGAGCCAGAGCCACCCGAAAATGCCAAATCGGTTCAGTCGACGACGATGTCAGGGTTAATCTAGAAAGGGTTTTCGCCCTATCTTGGCTAGACTCCGACTTTATCCTCGAGGCCCTGAGGAAAGAACGGCAGCAATTCACAGAGGAATTGCAACGCCGCAAGATTCGGATTCTAATGTCTATGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.09

Weight (kDa)

10.68

Isoelectric Point (pI)

86.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AbsI CCTCGAGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 168
AccII CGCG 1 cut(s) 115
AciI CCGC 3 cut(s) 113, 286, 313
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 4, 240
ApeKI GCWGC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 4, 241
AvaI CYCGRG 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 245
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 74, 272
BfaI CTAG 2 cut(s) 191, 218
BisI GCNGC 2 cut(s) 260, 286
BlsI GCNGC 2 cut(s) 261, 287
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 4, 241
BmrI ACTGGG 1 cut(s) 5
BmuI ACTGGG 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 11, 84
Bse21I CCTNAGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 63, 236
BseNI ACTGG 2 cut(s) 11, 84
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 6, 242
BsiHKCI CYCGRG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 213
BsnI GGCC 2 cut(s) 6, 242
BsoBI CYCGRG 1 cut(s) 236
BspACI CCGC 3 cut(s) 113, 286, 313
BspANI GGCC 2 cut(s) 6, 242
BspCNI CTCAG 2 cut(s) 62, 237
BspFNI CGCG 1 cut(s) 115
BsrI ACTGG 2 cut(s) 11, 84
BssNI GRCGYC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 49, 245
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 117
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 245
BsuRI GGCC 2 cut(s) 6, 242
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 18, 77
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 4, 241
CseI GACGC 2 cut(s) 115, 129
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 6 cut(s) 6, 19, 134, 140, 217, 242
CviKI_1 RGCY 6 cut(s) 6, 19, 134, 140, 217, 242
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 49, 245
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 241
FaiI YATR 1 cut(s) 311
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 260, 286
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 260, 286
FspBI CTAG 2 cut(s) 191, 218
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 260, 286
HaeIII GGCC 2 cut(s) 6, 242
HgaI GACGC 2 cut(s) 115, 129
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 107
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 5 cut(s) 53, 83, 221, 292, 298
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 52, 226, 297
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 3 cut(s) 109, 173, 176
HpyCH4V TGCA 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 49, 245
Hsp92I GRCGYC 1 cut(s) 107
HspAI GCGC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 24, 47, 65, 148, 166, 257
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 2 cut(s) 191, 218
MaeIII GTNAC 1 cut(s) 42
MboII GAAGA 1 cut(s) 21
MluCI AATT 2 cut(s) 263, 275
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 8 cut(s) 17, 58, 106, 119, 232, 240, 245, 265
MseI TTAA 1 cut(s) 186
MvnI CGCG 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 4 cut(s) 53, 83, 292, 298
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 261, 287
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 4, 241
PspXI VCTCGAGB 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 260, 286
Sau96I GGNCC 2 cut(s) 4, 241
SchI GAGTC 1 cut(s) 215
SetI ASST 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 20, 236
SmoI CTYRAG 2 cut(s) 20, 236
Sse9I AATT 2 cut(s) 263, 275
SsiI CCGC 3 cut(s) 113, 286, 313
SspMI CTAG 2 cut(s) 191, 218
TaqI TCGA 2 cut(s) 168, 237
TasI AATT 2 cut(s) 263, 275
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 4 cut(s) 53, 83, 292, 298
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 18, 84
TseI GCWGC 1 cut(s) 259
TspRI CASTG 2 cut(s) 18, 84
Tth111I GACNNNGTC 1 cut(s) 176
XbaI TCTAGA 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 2 cut(s) 191, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.