Rh2BG542800

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000951
Physical Location & Seq
Reverse (-)
75114649 .. 75121227
6579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG542800.1

Sequence Viewer

Length: 1008 bp
ATGTCATTTAAAATTTTTTATGTTTATGCTAACTTTGAATTTTTGACACATGAGCCTGCGGGAGTGTCTGAGCCAAATAGAGAGGAAGAAAACCAAATAGAAGATGTTGGCAAGGGCAAGAGGAAGGCCAAGGCTCCTAGGGAACCTCGCAGAGTGAAGGCAAAGGAGGAAGTAGTTGAGCCTGAACTTCCTCTGCCTTTGGGGGTTCCCTTAACAACTGTTGCGGGCATTGAACTACATCCTCAGGACGTAGGACATGCCCTACAGTTTATAGAGTTCTGTGTGGCCCTTGAAGAGGTTCTTAAGTTCAGCAAAGAAGATGCTGAATCTCTTCTCAGATACCTAATGCATCAACGATACTCCTCAATAATCCGATTCCAGGCCAAACTCCTGTCTGAGATACAGAAGACGGGGGACGAACTGCCCTCAGATTTCTTTAGTAGAGGAGTTGAGGGGTATGACTCCTTGGACTTCTCCCAGAAGCTTAGAGTCCTAACTTTCCTTTGTGATGAGGCCCTTGGCACCAAATCACTGAGCAATTTCATAGAAAGCCAAAAAGAAATATTCTCTAAAAGTAAGATCGCAAAAGCAGAGGTGGCCGAGGCCAAGGCAGTTACTGCAGGAGACAATGCTGCTTCAATTTCTTCAGATCACGAATCTACTGTTTCGCGACTGAAGAGTGAAGCAGCTCAAGATCATGCAGAGTTGCTTGAAGCAAAAGCCTTGAAATCAAAGCCTTATCTGTTCGATGCTGATGGTCGTGCATTTTGGAGATTGACAGGCTATAGTGATGGAGATGATGTGCTGCTTCAAGATGTAGGAACTTGGGATCCATTTACATCTTCTGATGAAAAATGTATGGGGCAGAAAAGAAAGAAGCAGTTGAAAAATACTGCTCCCGTAAGGACAAGAGGCCTTATGTCTGAGACTGAAACCCTGTCTCAAACACTTCCTTCAAGTTCTGGAACACTTCTTCAAGTTCTGGAAGTAAGGAAGGAGAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1 zf-4CXXC_R1

Protein Analysis

335

Amino Acids

37.49

Weight (kDa)

5.5

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AccII CGCG 1 cut(s) 670
AciI CCGC 2 cut(s) 59, 224
AclWI GGATC 2 cut(s) 824, 837
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 12, 38
AcuI CTGAAG 2 cut(s) 630, 695
AfiI CCNNNNNNNGG 2 cut(s) 295, 379
AflII CTTAAG 1 cut(s) 302
AjnI CCWGG 1 cut(s) 378
AloI GAACNNNNNNTCC 2 cut(s) 814, 846
AluBI AGCT 3 cut(s) 484, 689, 1005
AluI AGCT 3 cut(s) 484, 689, 1005
Alw26I GTCTC 3 cut(s) 618, 920, 945
AlwI GGATC 2 cut(s) 824, 837
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 7 cut(s) 126, 285, 381, 513, 597, 603, 913
ApeKI GCWGC 3 cut(s) 632, 686, 805
ApoI RAATTY 2 cut(s) 12, 38
Asp700I GAANNNNTTC 2 cut(s) 297, 330
AspA2I CCTAGG 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 286, 514
AvrII CCTAGG 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 243
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 3 cut(s) 619, 698, 792
BccI CCATC 2 cut(s) 749, 785
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 618, 920, 945
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 3 cut(s) 263, 618, 784
BfrI CTTAAG 1 cut(s) 302
BisI GCNGC 3 cut(s) 633, 687, 806
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 3 cut(s) 634, 688, 807
Bme1390I CCNGG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 286, 514
BmiI GGNNCC 5 cut(s) 135, 144, 207, 523, 831
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 3 cut(s) 310, 358, 739
BpiI GAAGAC 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 675
BsaJI CCNNGG 6 cut(s) 129, 137, 465, 517, 600, 606
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 379
Bse21I CCTNAGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 6 cut(s) 129, 137, 465, 517, 600, 606
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 295, 379
BseMII CTCAG 7 cut(s) 60, 257, 349, 387, 441, 524, 915
BseRI GAGGAG 2 cut(s) 352, 459
BseXI GCAGC 3 cut(s) 619, 698, 792
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 7 cut(s) 128, 287, 383, 515, 599, 605, 915
BshNI GGYRCC 1 cut(s) 521
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 295, 379
BsmAI GTCTC 3 cut(s) 618, 920, 945
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 7 cut(s) 128, 287, 383, 515, 599, 605, 915
Bsp143I GATC 4 cut(s) 579, 649, 694, 829
Bsp68I TCGCGA 1 cut(s) 670
BspACI CCGC 2 cut(s) 59, 224
BspANI GGCC 7 cut(s) 128, 287, 383, 515, 599, 605, 915
BspCNI CTCAG 7 cut(s) 61, 256, 348, 388, 440, 525, 916
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 5 cut(s) 135, 144, 207, 523, 831
BspMAI CTGCAG 1 cut(s) 622
BspPI GGATC 2 cut(s) 824, 837
BspT107I GGYRCC 1 cut(s) 521
BspTI CTTAAG 1 cut(s) 302
BssECI CCNNGG 6 cut(s) 129, 137, 465, 517, 600, 606
BssMI GATC 4 cut(s) 579, 649, 694, 829
BssT1I CCWWGG 5 cut(s) 129, 137, 465, 517, 606
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 220, 267, 664
Bst6I CTCTTC 3 cut(s) 288, 336, 671
BstAFI CTTAAG 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 2 cut(s) 57, 226
BstDEI CTNAG 8 cut(s) 69, 243, 335, 396, 427, 485, 533, 924
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 670
BstKTI GATC 4 cut(s) 582, 652, 697, 832
BstMAI GTCTC 3 cut(s) 618, 920, 945
BstMBI GATC 4 cut(s) 579, 649, 694, 829
BstMWI GCNNNNNNNGC 2 cut(s) 596, 617
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 3 cut(s) 263, 618, 784
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 3 cut(s) 619, 698, 792
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 7 cut(s) 128, 287, 383, 515, 599, 605, 915
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 530
BtuMI TCGCGA 1 cut(s) 670
Cac8I GCNNGC 2 cut(s) 57, 226
CaiI CAGNNNCTG 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 286, 514
CviAII CATG 3 cut(s) 50, 257, 698
DdeI CTNAG 8 cut(s) 69, 243, 335, 396, 427, 485, 533, 924
DpnI GATC 4 cut(s) 581, 651, 696, 831
DpnII GATC 4 cut(s) 579, 649, 694, 829
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 3 cut(s) 288, 336, 671
EarI CTCTTC 3 cut(s) 288, 336, 671
Eco130I CCWWGG 5 cut(s) 129, 137, 465, 517, 606
Eco147I AGGCCT 1 cut(s) 915
Eco57I CTGAAG 2 cut(s) 630, 695
Eco81I CCTNAGG 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 5 cut(s) 129, 137, 465, 517, 606
EcoT22I ATGCAT 1 cut(s) 351
ErhI CCWWGG 5 cut(s) 129, 137, 465, 517, 606
FaeI CATG 3 cut(s) 53, 260, 701
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 49, 256, 697
FauI CCCGC 2 cut(s) 52, 217
Fnu4HI GCNGC 3 cut(s) 633, 687, 806
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 633, 687, 806
FspBI CTAG 1 cut(s) 138
GluI GCNGC 3 cut(s) 633, 687, 806
HaeIII GGCC 7 cut(s) 128, 287, 383, 515, 599, 605, 915
Hin1II CATG 3 cut(s) 53, 260, 701
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 5 cut(s) 326, 375, 461, 489, 656
Hpy188I TCNGA 8 cut(s) 70, 338, 374, 397, 430, 649, 847, 925
Hpy188III TCNNGA 7 cut(s) 245, 653, 669, 692, 812, 963, 983
HpyAV CCTTC 4 cut(s) 118, 151, 963, 988
HpyCH4III ACNGT 3 cut(s) 220, 267, 664
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 349, 620, 701, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 617
HpyF3I CTNAG 8 cut(s) 69, 243, 335, 396, 427, 485, 533, 924
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 3 cut(s) 53, 260, 701
Kzo9I GATC 4 cut(s) 579, 649, 694, 829
LmnI GCTCC 2 cut(s) 139, 901
Lsp1109I GCAGC 3 cut(s) 619, 698, 792
LweI GCATC 3 cut(s) 310, 358, 739
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 613
MalI GATC 4 cut(s) 581, 651, 696, 831
MboI GATC 4 cut(s) 579, 649, 694, 829
MflI RGATCY 1 cut(s) 829
MluCI AATT 4 cut(s) 12, 38, 538, 639
MlyI GAGTC 2 cut(s) 455, 498
Mph1103I ATGCAT 1 cut(s) 351
MroXI GAANNNNTTC 2 cut(s) 297, 330
MseI TTAA 3 cut(s) 9, 212, 303
MspCI CTTAAG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 2 cut(s) 596, 617
NdeII GATC 4 cut(s) 579, 649, 694, 829
NlaIII CATG 3 cut(s) 53, 260, 701
NlaIV GGNNCC 5 cut(s) 135, 144, 207, 523, 831
NmeAIII GCCGAG 1 cut(s) 625
NruI TCGCGA 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 260
PceI AGGCCT 1 cut(s) 915
PdmI GAANNNNTTC 2 cut(s) 297, 330
PfeI GAWTC 3 cut(s) 326, 375, 656
PkrI GCNGC 3 cut(s) 634, 688, 807
PleI GAGTC 2 cut(s) 455, 497
PpsI GAGTC 2 cut(s) 455, 497
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 5 cut(s) 135, 144, 207, 523, 831
PspPI GGNCC 2 cut(s) 286, 514
PstI CTGCAG 1 cut(s) 622
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 829
RruI TCGCGA 1 cut(s) 670
SaqAI TTAA 3 cut(s) 9, 212, 303
SatI GCNGC 3 cut(s) 633, 687, 806
Sau3AI GATC 4 cut(s) 579, 649, 694, 829
Sau96I GGNCC 2 cut(s) 286, 514
SchI GAGTC 2 cut(s) 455, 498
ScrFI CCNGG 1 cut(s) 380
SetI ASST 8 cut(s) 148, 252, 300, 345, 486, 597, 691, 1007
SfaNI GCATC 3 cut(s) 310, 358, 739
SfcI CTRYAG 3 cut(s) 263, 618, 784
SmlI CTYRAG 2 cut(s) 302, 690
SmoI CTYRAG 2 cut(s) 302, 690
Sse9I AATT 4 cut(s) 12, 38, 538, 639
SseBI AGGCCT 1 cut(s) 915
SsiI CCGC 2 cut(s) 59, 224
SspI AATATT 1 cut(s) 564
SspMI CTAG 1 cut(s) 138
StuI AGGCCT 1 cut(s) 915
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 5 cut(s) 129, 137, 465, 517, 606
TaaI ACNGT 3 cut(s) 220, 267, 664
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 747
TasI AATT 4 cut(s) 12, 38, 538, 639
TfiI GAWTC 3 cut(s) 326, 375, 656
Tru1I TTAA 3 cut(s) 9, 212, 303
Tru9I TTAA 3 cut(s) 9, 212, 303
TscAI CASTG 1 cut(s) 537
TseI GCWGC 3 cut(s) 632, 686, 805
TspDTI ATGAA 2 cut(s) 532, 864
TspRI CASTG 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 2 cut(s) 12, 38
XceI RCATGY 1 cut(s) 260
XmaJI CCTAGG 1 cut(s) 137
XmnI GAANNNNTTC 2 cut(s) 297, 330
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.