Rh7BG316800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000951
Physical Location & Seq
Forward (+)
30654865 .. 30662676
7812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG316800.1

Sequence Viewer

Length: 819 bp
ATGGAGGGGTTGAACCAGTGGGAGGTGGCCATCAGGTTGCAGGTGTTCTCCGCTACTCCACCTCCACCTCCCTTGGTATCGCCGCGATCCTCATCGCCATTGCCGCGCAAAGTCGCAAAGTCCAAAATCGGTTCCGGTTTCGTCGATGACATCGCCGTTGATCTCAATAGGGTTCTTGCCCTATCTCGGTTGGACTCGGAGTTCGTGCTTGAGGCTCTGAGGAGAGAACGGAAAGAATTCGCGGAGGAGATGCAGCGCCGCAAAATTCTCACGGTGGTAGGAAAGGCTCTGTTTCTGAGGTTTGGATTGCACAATAAAGCATGGGTTGCCTTTCCCAGAGGTTTCAACATTCAAAGACTGAGGGTTCCAGACTTGGTTGATTGGTCTTCAACTTCTTGGAATCTGGATCCCATTGCTCAGCATTTGACACCTGCTGTGGTTGTTGCTATTGAGTCCATCCCATTGTCCTCTACTTGGGAACCTGATAAATACAAGAATCAAAGGAAGCCCATCAAGCTTCAAAAGAATCAAGAGATTATAGTCACCAGTAACTGTGCTATTCTTGTTCATGAAGTTATGATCTCTATGAGATTTGAGGATATGAAACCTCAAAGCGTCTTGTGTTCTCATAAAACAATTACTTTGAAAATTCTGGCCTATGAGCTGGAGCTAGGTTTGATGCTTGAGTTCATGACCAACTCTCATCATCCTACCCGAGCTGAAGCAACCAGCCTTGCCAATGCAGGCTCAGTGGAACTAACTGCCCGAGCTGAAGCAACCAGCCTTGCCAATGCAGGCTCAGTGGAACTAACTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

272

Amino Acids

30.43

Weight (kDa)

9.1

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 31, 439
Acc36I ACCTGC 2 cut(s) 31, 439
AccII CGCG 3 cut(s) 85, 106, 242
AciI CCGC 5 cut(s) 51, 83, 104, 242, 259
AclWI GGATC 3 cut(s) 81, 401, 414
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 236, 264, 648
AcuI CTGAAG 2 cut(s) 741, 792
AfiI CCNNNNNNNGG 3 cut(s) 22, 186, 474
AgsI TTSAA 6 cut(s) 13, 346, 353, 390, 521, 646
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 5 cut(s) 517, 664, 670, 719, 770
AluI AGCT 5 cut(s) 517, 664, 670, 719, 770
AlwI GGATC 3 cut(s) 81, 401, 414
AlwNI CAGNNNCTG 1 cut(s) 552
Ama87I CYCGRG 2 cut(s) 714, 765
AoxI GGCC 2 cut(s) 27, 654
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 3 cut(s) 236, 264, 648
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 2 cut(s) 108, 258
AsuHPI GGTGA 1 cut(s) 535
AvaI CYCGRG 2 cut(s) 714, 765
BalI TGGCCA 1 cut(s) 29
BamHI GGATCC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 38, 464, 518
BceAI ACGGC 1 cut(s) 140
BfaI CTAG 1 cut(s) 671
BfoI RGCGCY 1 cut(s) 259
BfuAI ACCTGC 2 cut(s) 31, 439
BisI GCNGC 4 cut(s) 83, 104, 254, 259
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 4 cut(s) 84, 105, 255, 260
BmeT110I CYCGRG 2 cut(s) 714, 765
BmiI GGNNCC 4 cut(s) 133, 366, 408, 480
BmsI GCATC 2 cut(s) 240, 669
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 686
Bpu1102I GCTNAGC 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 230, 704
BsaBI GATNNNNATC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 186, 474
Bse1I ACTGG 2 cut(s) 16, 546
Bse3DI GCAATG 2 cut(s) 98, 411
Bse8I GATNNNNATC 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 456, 706
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 22, 186, 474
BseMI GCAATG 2 cut(s) 98, 411
BseMII CTCAG 6 cut(s) 209, 287, 350, 431, 762, 813
BseNI ACTGG 2 cut(s) 16, 546
BseRI GAGGAG 2 cut(s) 235, 260
BseXI GCAGC 1 cut(s) 265
Bsh1236I CGCG 3 cut(s) 85, 106, 242
BshFI GGCC 2 cut(s) 29, 656
BsiHKCI CYCGRG 2 cut(s) 714, 765
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 3 cut(s) 22, 186, 474
BsnI GGCC 2 cut(s) 29, 656
BsoBI CYCGRG 2 cut(s) 714, 765
Bsp143I GATC 4 cut(s) 86, 160, 406, 579
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 5 cut(s) 51, 83, 104, 242, 259
BspANI GGCC 2 cut(s) 29, 656
BspCNI CTCAG 6 cut(s) 210, 288, 351, 430, 761, 812
BspFNI CGCG 3 cut(s) 85, 106, 242
BspHI TCATGA 2 cut(s) 568, 690
BspLI GGNNCC 4 cut(s) 133, 366, 408, 480
BspMI ACCTGC 2 cut(s) 31, 439
BspPI GGATC 3 cut(s) 81, 401, 414
BsrDI GCAATG 2 cut(s) 98, 411
BsrI ACTGG 2 cut(s) 16, 546
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 86, 160, 406, 579
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 274, 554, 814
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 745, 796
BstDEI CTNAG 6 cut(s) 218, 296, 359, 417, 748, 799
BstF5I GGATG 2 cut(s) 456, 706
BstFNI CGCG 3 cut(s) 85, 106, 242
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 2 cut(s) 108, 258
BstKTI GATC 4 cut(s) 89, 163, 409, 582
BstMBI GATC 4 cut(s) 86, 160, 406, 579
BstMWI GCNNNNNNNGC 3 cut(s) 103, 326, 514
BstUI CGCG 3 cut(s) 85, 106, 242
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 2 cut(s) 29, 656
BtgZI GCGATG 2 cut(s) 78, 136
BtsCI GGATG 2 cut(s) 456, 706
BtsIMutI CAGTG 3 cut(s) 23, 756, 807
BveI ACCTGC 2 cut(s) 31, 439
Cac8I GCNNGC 2 cut(s) 745, 796
CaiI CAGNNNCTG 1 cut(s) 552
CciI TCATGA 2 cut(s) 568, 690
CfoI GCGC 2 cut(s) 108, 258
CseI GACGC 1 cut(s) 604
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 3 cut(s) 321, 569, 691
DdeI CTNAG 6 cut(s) 218, 296, 359, 417, 748, 799
DpnI GATC 4 cut(s) 88, 162, 408, 581
DpnII GATC 4 cut(s) 86, 160, 406, 579
EaeI YGGCCR 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 741, 792
Eco88I CYCGRG 2 cut(s) 714, 765
EcoRI GAATTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 3 cut(s) 324, 572, 694
FatI CATG 3 cut(s) 320, 568, 690
Fnu4HI GCNGC 4 cut(s) 83, 104, 254, 259
FokI GGATG 2 cut(s) 443, 693
Fsp4HI GCNGC 4 cut(s) 83, 104, 254, 259
FspBI CTAG 1 cut(s) 671
GlaI GCGC 2 cut(s) 107, 257
GluI GCNGC 4 cut(s) 83, 104, 254, 259
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 2 cut(s) 29, 656
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 604
HhaI GCGC 2 cut(s) 108, 258
Hin1II CATG 3 cut(s) 324, 572, 694
Hin6I GCGC 2 cut(s) 106, 256
HinP1I GCGC 2 cut(s) 106, 256
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 194, 400, 452, 496, 526
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 535
Hpy188I TCNGA 3 cut(s) 199, 219, 297
Hpy188III TCNNGA 5 cut(s) 368, 404, 530, 569, 691
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 3 cut(s) 274, 554, 814
HpyCH4V TGCA 5 cut(s) 40, 253, 310, 743, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 326, 514
HpyF3I CTNAG 6 cut(s) 218, 296, 359, 417, 748, 799
Hsp92II CATG 3 cut(s) 324, 572, 694
HspAI GCGC 2 cut(s) 106, 256
Kzo9I GATC 4 cut(s) 86, 160, 406, 579
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 2 cut(s) 240, 669
MaeI CTAG 1 cut(s) 671
MaeIII GTNAC 2 cut(s) 541, 548
MalI GATC 4 cut(s) 88, 162, 408, 581
MboI GATC 4 cut(s) 86, 160, 406, 579
MboII GAAGA 1 cut(s) 378
MflI RGATCY 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 4 cut(s) 236, 264, 636, 648
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 188, 461
MmeI TCCRAC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 1 cut(s) 135
MvnI CGCG 3 cut(s) 85, 106, 242
MwoI GCNNNNNNNGC 3 cut(s) 103, 326, 514
NdeII GATC 4 cut(s) 86, 160, 406, 579
NlaIII CATG 3 cut(s) 324, 572, 694
NlaIV GGNNCC 4 cut(s) 133, 366, 408, 480
NmuCI GTSAC 1 cut(s) 541
PagI TCATGA 2 cut(s) 568, 690
PaqCI CACCTGC 2 cut(s) 31, 439
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 3 cut(s) 400, 496, 526
PkrI GCNGC 4 cut(s) 84, 105, 255, 260
PleI GAGTC 2 cut(s) 188, 460
PpsI GAGTC 2 cut(s) 188, 460
PspN4I GGNNCC 4 cut(s) 133, 366, 408, 480
PstNI CAGNNNCTG 1 cut(s) 552
PsuI RGATCY 1 cut(s) 406
SatI GCNGC 4 cut(s) 83, 104, 254, 259
Sau3AI GATC 4 cut(s) 86, 160, 406, 579
SchI GAGTC 2 cut(s) 188, 461
SfaNI GCATC 2 cut(s) 240, 669
SmlI CTYRAG 2 cut(s) 209, 683
SmoI CTYRAG 2 cut(s) 209, 683
Sse9I AATT 4 cut(s) 236, 264, 636, 648
SsiI CCGC 5 cut(s) 51, 83, 104, 242, 259
SspMI CTAG 1 cut(s) 671
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 274, 554, 814
TaqI TCGA 1 cut(s) 144
TasI AATT 4 cut(s) 236, 264, 636, 648
TauI GCSGC 3 cut(s) 85, 106, 261
TfiI GAWTC 3 cut(s) 400, 496, 526
TscAI CASTG 3 cut(s) 23, 756, 807
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 557, 585, 617, 679
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 3 cut(s) 23, 756, 807
XapI RAATTY 3 cut(s) 236, 264, 648
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.