Rh7AG324800

Ran-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000951
Physical Location & Seq
Reverse (-)
36869455 .. 36880673
11219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG324800.1

Sequence Viewer

Length: 618 bp
ATGGGTTCTGTCGATGACATCGCGGTTAATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTGTGCTTGAGGCTCTGAGGAGAGAACGCCAAGAATTTGCGGAGGAGTTGCAGCGCTGCAAAATTCGCACTTTAATGTCTATGCGTTGTAACATGTCTTATTCTACATCTGGTGAGCAACATGATCACTTGGCTACTCCACCTCCACCACCCTTGGTATCGCCGCAATCCTCATCACCGATTTGTTTCCGATTGCCGCGCAGAGTCGCCTCAAAATCCAAAATGGGTTCTATCGATGACATCGCGGTTAATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTGTGTTTGAGGCTCTGAGGAGAGAATGCCAAGAATTTGCGGAGGAGTTGCAGTGCCGCAAAATTTGCACTTTAATGTCTACGTGTAAAAATGCAACTATTTTGGGAACTCTGCCCAAGGACATCAAGGGTCCTTTATATCCTACCATTGCTGTACACAGCGAAAATGAGGAGTATGTGACATCTTTCTTGAATATTCAGCTGCTGTTCATCTATTTTGACTGGGCTATTGCTTCTGCATTTAACTCTCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH SPRY

Protein Analysis

205

Amino Acids

23.29

Weight (kDa)

5.47

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 440
AccII CGCG 3 cut(s) 23, 268, 314
AciI CCGC 7 cut(s) 23, 110, 233, 266, 314, 401, 418
AcsI RAATTY 4 cut(s) 104, 132, 395, 423
AfaI GTAC 1 cut(s) 516
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 54, 345
AflIII ACRYGT 2 cut(s) 162, 443
AgsI TTSAA 1 cut(s) 553
AluBI AGCT 2 cut(s) 562, 613
AluI AGCT 2 cut(s) 562, 613
AlwNI CAGNNNCTG 1 cut(s) 565
Aor51HI AGCGCT 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 121, 126, 562
ApoI RAATTY 4 cut(s) 104, 132, 395, 423
ArsI GACNNNNNNTTYG 4 cut(s) 53, 85, 344, 376
AspLEI GCGC 2 cut(s) 126, 270
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 194, 237
AvaII GGWCC 1 cut(s) 491
BbvI GCAGC 3 cut(s) 113, 133, 549
BclI TGATCA 1 cut(s) 193
BfaI CTAG 2 cut(s) 59, 350
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 6 cut(s) 122, 127, 233, 266, 418, 563
BlsI GCNGC 6 cut(s) 123, 128, 234, 267, 419, 564
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 492
BmrI ACTGGG 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 222, 477
BsaXI ACNNNNNCTCC 6 cut(s) 196, 226, 350, 380, 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 345
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 507
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 222, 477
BseLI CCNNNNNNNGG 2 cut(s) 54, 345
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 77, 368
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 5 cut(s) 103, 128, 394, 419, 545
BseXI GCAGC 3 cut(s) 113, 133, 549
Bsh1236I CGCG 3 cut(s) 23, 268, 314
BshVI ATCGAT 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 54, 345
BsmI GAATGC 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 7 cut(s) 23, 110, 233, 266, 314, 401, 418
BspCNI CTCAG 2 cut(s) 78, 369
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 3 cut(s) 23, 268, 314
BspLI GGNNCC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 2 cut(s) 222, 477
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 2 cut(s) 222, 477
BstAPI GCANNNNNTGC 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 444
BstDEI CTNAG 3 cut(s) 86, 377, 609
BstFNI CGCG 3 cut(s) 23, 268, 314
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 270
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 135, 426
BstNSI RCATGY 1 cut(s) 166
BstUI CGCG 3 cut(s) 23, 268, 314
BstV1I GCAGC 3 cut(s) 113, 133, 549
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtgZI GCGATG 2 cut(s) 4, 295
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
CaiI CAGNNNCTG 1 cut(s) 565
CfoI GCGC 2 cut(s) 126, 270
Cfr13I GGNCC 1 cut(s) 491
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 515
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 2 cut(s) 163, 191
CviJI RGCY 8 cut(s) 58, 83, 203, 349, 374, 562, 587, 613
CviKI_1 RGCY 8 cut(s) 58, 83, 203, 349, 374, 562, 587, 613
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 3 cut(s) 86, 377, 609
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 222, 477
Eco47I GGWCC 1 cut(s) 491
Eco47III AGCGCT 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 491
EcoT14I CCWWGG 2 cut(s) 222, 477
ErhI CCWWGG 2 cut(s) 222, 477
FaeI CATG 2 cut(s) 166, 194
FaiI YATR 5 cut(s) 152, 164, 192, 499, 537
FatI CATG 2 cut(s) 162, 190
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 6 cut(s) 122, 127, 233, 266, 418, 563
Fsp4HI GCNGC 6 cut(s) 122, 127, 233, 266, 418, 563
FspBI CTAG 2 cut(s) 59, 350
GlaI GCGC 2 cut(s) 125, 269
GluI GCNGC 6 cut(s) 122, 127, 233, 266, 418, 563
HaeII RGCGCY 1 cut(s) 127
HhaI GCGC 2 cut(s) 126, 270
Hin1II CATG 2 cut(s) 166, 194
Hin6I GCGC 2 cut(s) 124, 268
HinP1I GCGC 2 cut(s) 124, 268
HinfI GANTC 3 cut(s) 62, 273, 353
HphI GGTGA 2 cut(s) 194, 237
Hpy166II GTNNAC 2 cut(s) 441, 517
Hpy188I TCNGA 5 cut(s) 67, 87, 260, 358, 378
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 2 cut(s) 441, 517
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 6 cut(s) 121, 129, 412, 429, 455, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 426
HpyF3I CTNAG 3 cut(s) 86, 377, 609
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 2 cut(s) 166, 194
HspAI GCGC 2 cut(s) 124, 268
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 165, 568
Lsp1109I GCAGC 3 cut(s) 113, 133, 549
MaeI CTAG 2 cut(s) 59, 350
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 158, 538
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MluCI AATT 4 cut(s) 104, 132, 395, 423
MlyI GAGTC 3 cut(s) 56, 282, 347
MseI TTAA 5 cut(s) 27, 143, 318, 434, 603
MslI CAYNNNNRTG 2 cut(s) 143, 434
MspA1I CMGCKG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 392
MvnI CGCG 3 cut(s) 23, 268, 314
MwoI GCNNNNNNNGC 2 cut(s) 135, 426
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 166, 194
NlaIV GGNNCC 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 538
NspI RCATGY 1 cut(s) 166
PciI ACATGT 1 cut(s) 162
PctI GAATGC 1 cut(s) 392
PkrI GCNGC 6 cut(s) 123, 128, 234, 267, 419, 564
PleI GAGTC 3 cut(s) 56, 281, 347
PpsI GAGTC 3 cut(s) 56, 281, 347
Ppu21I YACGTR 1 cut(s) 444
PpuMI RGGWCCY 1 cut(s) 491
PscI ACATGT 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 491
PspPPI RGGWCCY 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 2 cut(s) 143, 434
SaqAI TTAA 5 cut(s) 27, 143, 318, 434, 603
SatI GCNGC 6 cut(s) 122, 127, 233, 266, 418, 563
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 3 cut(s) 56, 282, 347
SetI ASST 4 cut(s) 214, 446, 564, 615
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 143, 434
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 104, 132, 395, 423
SsiI CCGC 7 cut(s) 23, 110, 233, 266, 314, 401, 418
SspI AATATT 1 cut(s) 556
SspMI CTAG 2 cut(s) 59, 350
StyI CCWWGG 2 cut(s) 222, 477
TaiI ACGT 1 cut(s) 446
TaqI TCGA 2 cut(s) 12, 303
TasI AATT 4 cut(s) 104, 132, 395, 423
TatI WGTACW 1 cut(s) 514
TauI GCSGC 3 cut(s) 235, 268, 420
Tru1I TTAA 5 cut(s) 27, 143, 318, 434, 603
Tru9I TTAA 5 cut(s) 27, 143, 318, 434, 603
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 3 cut(s) 121, 126, 562
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 4 cut(s) 104, 132, 395, 423
XceI RCATGY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 2 cut(s) 59, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.