Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

78038379 .. 78045212

Gene Structure 6834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG551800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCTGCGGGACCTACAACTGCAGTGTGTGCATGAAGCGATGTCTGAGCCAAATAGAGAGGAAGAAAACCAAATAGAAGATGTTGGCAAGGGCAAGAGGAAGGCCAAGGCTCCTAGGGAACCTCGCAGAGTGAAGGCAAAGGAGGAAGTAGTTGAGCCTGAACTTCCTCTGCCTTTGGGGGTTCCCTTAACAACTGTTGCGGGCATTGAACTACATCCTCAGGACGTAGGACATGCCCTACAGTTTATAGAGTTCTGTGTGGCCCTTGAAGAGGTTCTTAAGTTCAGCAAAGAAGATGCTGAATCTCTTCTCAGATACCTAATGCATCAACGATACTCCTCAATAATCCGATTCCAGGCCAAACTCCTGTCTGAGATACAGAAGACGGGGGACGAACTGCCCTCAGATTTCTTTAGTAGAGGAGTTGAGGGGTATGACTCCTTGGACTTCTCCCAGAAGCTTAGAGTCCTAACTTTCCTTTGTGATGAGGCCCTTGGCACCAAATCACTGAGCAATTTCATAGAAAGCCAAAAAGAAATATTCTCTAAAAGTAAGATCGCAAAAGCAGAGGTGGCCGAGGCCAAGGCAGTTACTGCAGGAGACAATGCTGCTTCAATTTCTTCAGATCACGAATCTACTGTTTCGCGACTGAAGAGTGAAGCAGCTCAAGATCATGCAGAGTTGCTTGAAGCAAAAGCCTTGAAATCAAAGCCTTATCTGTTCGATGCTGATGGTCGTGCATTTTGGAGATTGACAGGCTATAGTGATGGAGATGATGTGCTGCTTCAAGATGTAGGAACTTGGGATCCATTTACATCTTCTGATGAAAAATGTATGGGGCAGAAAAGAAAGAAGCAGTTGAAAAATACTGCTCCCGTAAGGACAAGAGGCCTTATGTCTGAGACTGAAACCCTGTCTCAAACACTTCCTTCAAGTTCTGGAACACTTCTTCAAGTTCTGGAAGTAAGGAAGGAGAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT WHIM1 zf-4CXXC_R1

Protein Analysis

327

Amino Acids

36.56

Weight (kDa)

5.5

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	1 cut(s)	646
AciI	CCGC	2 cut(s)	7, 200
AclWI	GGATC	2 cut(s)	800, 813
AcoI	YGGCCR	1 cut(s)	573
AcuI	CTGAAG	2 cut(s)	606, 671
AfiI	CCNNNNNNNGG	2 cut(s)	271, 355
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	9 cut(s)	209, 269, 615, 689, 703, 788, 862, 933, 953
AjnI	CCWGG	1 cut(s)	354
AloI	GAACNNNNNNTCC	2 cut(s)	790, 822
AluBI	AGCT	3 cut(s)	460, 665, 981
AluI	AGCT	3 cut(s)	460, 665, 981
Alw26I	GTCTC	3 cut(s)	594, 896, 921
AlwI	GGATC	2 cut(s)	800, 813
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	7 cut(s)	102, 261, 357, 489, 573, 579, 889
ApeKI	GCWGC	4 cut(s)	4, 608, 662, 781
Asp700I	GAANNNNTTC	2 cut(s)	273, 306
AspA2I	CCTAGG	1 cut(s)	113
AspS9I	GGNCC	3 cut(s)	10, 262, 490
AvaII	GGWCC	1 cut(s)	10
AvrII	CCTAGG	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	595, 674, 768
BccI	CCATC	2 cut(s)	725, 761
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	594, 896, 921
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	4 cut(s)	20, 239, 594, 760
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	4 cut(s)	5, 609, 663, 782
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	4 cut(s)	6, 610, 664, 783
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	3 cut(s)	10, 262, 490
BmiI	GGNNCC	6 cut(s)	11, 111, 120, 183, 499, 807
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	3 cut(s)	286, 334, 715
BpiI	GAAGAC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	651
BsaJI	CCNNGG	6 cut(s)	105, 113, 441, 493, 576, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 355
Bse21I	CCTNAGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	6 cut(s)	105, 113, 441, 493, 576, 582
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	271, 355
BseMII	CTCAG	7 cut(s)	36, 233, 325, 363, 417, 500, 891
BseRI	GAGGAG	2 cut(s)	328, 435
BseXI	GCAGC	3 cut(s)	595, 674, 768
Bsh1236I	CGCG	1 cut(s)	646
BshFI	GGCC	7 cut(s)	104, 263, 359, 491, 575, 581, 891
BshNI	GGYRCC	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	23, 404
BslI	CCNNNNNNNGG	2 cut(s)	271, 355
BsmAI	GTCTC	3 cut(s)	594, 896, 921
BsmFI	GGGAC	2 cut(s)	23, 404
BsnI	GGCC	7 cut(s)	104, 263, 359, 491, 575, 581, 891
Bsp143I	GATC	4 cut(s)	555, 625, 670, 805
Bsp68I	TCGCGA	1 cut(s)	646
BspACI	CCGC	2 cut(s)	7, 200
BspANI	GGCC	7 cut(s)	104, 263, 359, 491, 575, 581, 891
BspCNI	CTCAG	7 cut(s)	37, 232, 324, 364, 416, 501, 892
BspFNI	CGCG	1 cut(s)	646
BspLI	GGNNCC	6 cut(s)	11, 111, 120, 183, 499, 807
BspMAI	CTGCAG	2 cut(s)	24, 598
BspPI	GGATC	2 cut(s)	800, 813
BspT107I	GGYRCC	1 cut(s)	497
BspTI	CTTAAG	1 cut(s)	278
BssECI	CCNNGG	6 cut(s)	105, 113, 441, 493, 576, 582
BssMI	GATC	4 cut(s)	555, 625, 670, 805
BssT1I	CCWWGG	5 cut(s)	105, 113, 441, 493, 582
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	196, 243, 640
Bst6I	CTCTTC	3 cut(s)	264, 312, 647
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	2 cut(s)	28, 593
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	8 cut(s)	45, 219, 311, 372, 403, 461, 509, 900
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	646
BstKTI	GATC	4 cut(s)	558, 628, 673, 808
BstMAI	GTCTC	3 cut(s)	594, 896, 921
BstMBI	GATC	4 cut(s)	555, 625, 670, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 572, 593
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	4 cut(s)	20, 239, 594, 760
BstUI	CGCG	1 cut(s)	646
BstV1I	GCAGC	3 cut(s)	595, 674, 768
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	7 cut(s)	104, 263, 359, 491, 575, 581, 891
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 506
BtuMI	TCGCGA	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	3 cut(s)	10, 262, 490
CviAII	CATG	3 cut(s)	32, 233, 674
DdeI	CTNAG	8 cut(s)	45, 219, 311, 372, 403, 461, 509, 900
DpnI	GATC	4 cut(s)	557, 627, 672, 807
DpnII	GATC	4 cut(s)	555, 625, 670, 805
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	3 cut(s)	264, 312, 647
EarI	CTCTTC	3 cut(s)	264, 312, 647
Eco130I	CCWWGG	5 cut(s)	105, 113, 441, 493, 582
Eco147I	AGGCCT	1 cut(s)	891
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	606, 671
Eco81I	CCTNAGG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	10, 490
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	5 cut(s)	105, 113, 441, 493, 582
EcoT22I	ATGCAT	1 cut(s)	327
ErhI	CCWWGG	5 cut(s)	105, 113, 441, 493, 582
FaeI	CATG	3 cut(s)	35, 236, 677
FaiI	YATR	9 cut(s)	33, 234, 248, 435, 521, 675, 762, 836, 896
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	2 cut(s)	23, 404
FatI	CATG	3 cut(s)	31, 232, 673
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	5, 609, 663, 782
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	5, 609, 663, 782
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	4 cut(s)	5, 609, 663, 782
HaeIII	GGCC	7 cut(s)	104, 263, 359, 491, 575, 581, 891
Hin1II	CATG	3 cut(s)	35, 236, 677
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	5 cut(s)	302, 351, 437, 465, 632
Hpy188I	TCNGA	8 cut(s)	46, 314, 350, 373, 406, 625, 823, 901
Hpy188III	TCNNGA	7 cut(s)	221, 629, 645, 668, 788, 939, 959
HpyAV	CCTTC	4 cut(s)	94, 127, 939, 964
HpyCH4III	ACNGT	3 cut(s)	196, 243, 640
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	6 cut(s)	22, 31, 325, 596, 677, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 572, 593
HpyF3I	CTNAG	8 cut(s)	45, 219, 311, 372, 403, 461, 509, 900
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	35, 236, 677
Kzo9I	GATC	4 cut(s)	555, 625, 670, 805
LmnI	GCTCC	2 cut(s)	115, 877
Lsp1109I	GCAGC	3 cut(s)	595, 674, 768
LweI	GCATC	3 cut(s)	286, 334, 715
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	4 cut(s)	557, 627, 672, 807
MboI	GATC	4 cut(s)	555, 625, 670, 805
MflI	RGATCY	1 cut(s)	805
MluCI	AATT	2 cut(s)	514, 615
MlyI	GAGTC	2 cut(s)	431, 474
Mph1103I	ATGCAT	1 cut(s)	327
MroXI	GAANNNNTTC	2 cut(s)	273, 306
MseI	TTAA	2 cut(s)	188, 279
MspCI	CTTAAG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	646
MwoI	GCNNNNNNNGC	3 cut(s)	28, 572, 593
NdeII	GATC	4 cut(s)	555, 625, 670, 805
NlaIII	CATG	3 cut(s)	35, 236, 677
NlaIV	GGNNCC	6 cut(s)	11, 111, 120, 183, 499, 807
NmeAIII	GCCGAG	1 cut(s)	601
NruI	TCGCGA	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	1 cut(s)	236
PceI	AGGCCT	1 cut(s)	891
PdmI	GAANNNNTTC	2 cut(s)	273, 306
PfeI	GAWTC	3 cut(s)	302, 351, 632
PkrI	GCNGC	4 cut(s)	6, 610, 664, 783
PleI	GAGTC	2 cut(s)	431, 473
PpsI	GAGTC	2 cut(s)	431, 473
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	6 cut(s)	11, 111, 120, 183, 499, 807
PspPI	GGNCC	3 cut(s)	10, 262, 490
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	2 cut(s)	24, 598
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	805
RruI	TCGCGA	1 cut(s)	646
SaqAI	TTAA	2 cut(s)	188, 279
SatI	GCNGC	4 cut(s)	5, 609, 663, 782
Sau3AI	GATC	4 cut(s)	555, 625, 670, 805
Sau96I	GGNCC	3 cut(s)	10, 262, 490
SchI	GAGTC	2 cut(s)	431, 474
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	9 cut(s)	15, 124, 228, 276, 321, 462, 573, 667, 983
SfaNI	GCATC	3 cut(s)	286, 334, 715
SfcI	CTRYAG	4 cut(s)	20, 239, 594, 760
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	278, 666
SmoI	CTYRAG	2 cut(s)	278, 666
Sse9I	AATT	2 cut(s)	514, 615
SseBI	AGGCCT	1 cut(s)	891
SsiI	CCGC	2 cut(s)	7, 200
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	891
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	5 cut(s)	105, 113, 441, 493, 582
TaaI	ACNGT	3 cut(s)	196, 243, 640
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	723
TasI	AATT	2 cut(s)	514, 615
TfiI	GAWTC	3 cut(s)	302, 351, 632
Tru1I	TTAA	2 cut(s)	188, 279
Tru9I	TTAA	2 cut(s)	188, 279
TscAI	CASTG	2 cut(s)	29, 513
TseI	GCWGC	4 cut(s)	4, 608, 662, 781
TspDTI	ATGAA	3 cut(s)	48, 508, 840
TspRI	CASTG	2 cut(s)	29, 513
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	10
XagI	CCTNNNNNAGG	1 cut(s)	269
XceI	RCATGY	1 cut(s)	236
XmaJI	CCTAGG	1 cut(s)	113
XmnI	GAANNNNTTC	2 cut(s)	273, 306
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.