Rh7CG337900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000951
Physical Location & Seq
Forward (+)
37744475 .. 37744786
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG337900.1

Sequence Viewer

Length: 312 bp
ATGGGCCTCCCAGTGAAGCTTGAGAGGTCTTCCTTGTGTTTGGTACCCTCAGATTCACAGCAAGGTACTCCACCACCACTGGAATCGCAACCATCCTCATCGCCGACGCCCCCGCGCAGAGGCAGAGGCAGAGCCACCCGAAAATGCCAAATTGGTTCAGTCGATGACGATGTCAGGGTTAATCTAGAAAGGGTTTCCGCCCTATCTTGGCTAGACTCCGACTTTATCCTCAAGGCCCTGAGGACAGAACGGCAACAATTCGCCGAGGAATTGCAACGCCGCAAGATTCGGATTCTAATGTCTATGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.66

Weight (kDa)

10.36

Isoelectric Point (pI)

77.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AccII CGCG 1 cut(s) 115
AciI CCGC 3 cut(s) 113, 198, 280
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 45, 67
AfiI CCNNNNNNNGG 2 cut(s) 119, 207
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AoxI GGCC 2 cut(s) 4, 234
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 4, 235
AxyI CCTNAGG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 21
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 266
BfaI CTAG 2 cut(s) 185, 212
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 4, 235
BmiI GGNNCC 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 5
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 41, 215
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 207
Bse1I ACTGG 2 cut(s) 11, 84
Bse21I CCTNAGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 119, 207
BseMII CTCAG 2 cut(s) 63, 230
BseNI ACTGG 2 cut(s) 11, 84
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 6, 236
BshNI GGYRCC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 119, 207
BsnI GGCC 2 cut(s) 6, 236
BspACI CCGC 3 cut(s) 113, 198, 280
BspANI GGCC 2 cut(s) 6, 236
BspCNI CTCAG 2 cut(s) 62, 231
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 11, 84
BssECI CCNNGG 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 49, 239
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 117
BstUI CGCG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 21
Bsu36I CCTNAGG 1 cut(s) 239
BsuRI GGCC 2 cut(s) 6, 236
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 18, 77
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 4, 235
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 44, 66
CviJI RGCY 5 cut(s) 6, 19, 134, 211, 236
CviKI_1 RGCY 5 cut(s) 6, 19, 134, 211, 236
CviQI GTAC 2 cut(s) 44, 66
DdeI CTNAG 2 cut(s) 49, 239
EciI GGCGGA 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 235
FaiI YATR 1 cut(s) 305
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 2 cut(s) 185, 212
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 280
HaeIII GGCC 2 cut(s) 6, 236
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 107
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 5 cut(s) 53, 83, 215, 286, 292
Hpy188I TCNGA 3 cut(s) 52, 220, 291
Hpy188III TCNNGA 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 49, 239
Hsp92I GRCGYC 1 cut(s) 107
HspAI GCGC 1 cut(s) 115
KpnI GGTACC 1 cut(s) 47
LpnPI CCDG 4 cut(s) 24, 65, 160, 251
MaeI CTAG 2 cut(s) 185, 212
MboII GAAGA 1 cut(s) 21
MluCI AATT 3 cut(s) 150, 257, 269
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 9 cut(s) 17, 18, 58, 106, 113, 119, 234, 239, 259
MseI TTAA 1 cut(s) 180
MvnI CGCG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 289
PfeI GAWTC 4 cut(s) 53, 83, 286, 292
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 4, 235
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 2 cut(s) 45, 67
RsaNI GTAC 2 cut(s) 44, 66
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 280
Sau96I GGNCC 2 cut(s) 4, 235
SchI GAGTC 1 cut(s) 209
SetI ASST 3 cut(s) 21, 29, 67
SmlI CTYRAG 2 cut(s) 20, 230
SmoI CTYRAG 2 cut(s) 20, 230
Sse9I AATT 3 cut(s) 150, 257, 269
SsiI CCGC 3 cut(s) 113, 198, 280
SspMI CTAG 2 cut(s) 185, 212
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 150, 257, 269
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 4 cut(s) 53, 83, 286, 292
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 18, 84
TspRI CASTG 2 cut(s) 18, 84
Tth111I GACNNNGTC 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 184
XspI CTAG 2 cut(s) 185, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.