Rh7AG317300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000951
Physical Location & Seq
Reverse (-)
35651451 .. 35652068
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG317300.1

Sequence Viewer

Length: 393 bp
ATGTCTCAACGTGATCGGTTGGCTACTCCAGTGCCACCACCCTTGGTATCGCCGCAATCCTCATCGCCGGTTTGTTTCCGATTGCCGCGCAGAGTCGCCTCAAAATCCAAAATCGGTTCTGTCGATGACATCGCGGTTAATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTGTGGTTGAGGCTCTGAGGAGAGAACGCCAAGAATTTGCGGAGGAGTTGCAGCGCCGCAAAATTCGCACTTTAATGTCTATGCGGGTTCTAGGAAAGGCTCTGTTTCTCAGGTTTGGAATGCACAATAAAGCATGGGTTGCCTTTCCCAGAGGTTTCAACATTCAAAGACTGGTGCTTTTGTTCAAATCAATCAACCGTCTTCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.03

Weight (kDa)

11.64

Isoelectric Point (pI)

77.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 88, 134
AciI CCGC 6 cut(s) 53, 86, 134, 221, 238, 265
AcsI RAATTY 2 cut(s) 215, 243
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 4 cut(s) 340, 347, 367, 386
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 215, 243
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspLEI GCGC 2 cut(s) 90, 237
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 170, 272
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 4 cut(s) 53, 86, 233, 238
BlsI GCNGC 4 cut(s) 54, 87, 234, 239
BpiI GAAGAC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 29, 357
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 188, 304
BseNI ACTGG 2 cut(s) 29, 357
BseRI GAGGAG 2 cut(s) 214, 239
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 2 cut(s) 88, 134
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 6 cut(s) 53, 86, 134, 221, 238, 265
BspCNI CTCAG 2 cut(s) 189, 303
BspFNI CGCG 2 cut(s) 88, 134
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 29, 357
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 197, 290
BstFNI CGCG 2 cut(s) 88, 134
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 90, 237
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 246, 320
BstUI CGCG 2 cut(s) 88, 134
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 374
BtgZI GCGATG 2 cut(s) 48, 115
BtsIMutI CAGTG 1 cut(s) 36
CfoI GCGC 2 cut(s) 90, 237
Cfr10I RCCGGY 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 1 cut(s) 315
CviJI RGCY 4 cut(s) 23, 169, 194, 281
CviKI_1 RGCY 4 cut(s) 23, 169, 194, 281
DdeI CTNAG 2 cut(s) 197, 290
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 318
FaiI YATR 2 cut(s) 263, 316
FatI CATG 1 cut(s) 314
FauI CCCGC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 53, 86, 233, 238
Fsp4HI GCNGC 4 cut(s) 53, 86, 233, 238
FspBI CTAG 2 cut(s) 170, 272
GlaI GCGC 2 cut(s) 89, 236
GluI GCNGC 4 cut(s) 53, 86, 233, 238
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 238
HapII CCGG 1 cut(s) 68
HhaI GCGC 2 cut(s) 90, 237
Hin1II CATG 1 cut(s) 318
Hin6I GCGC 2 cut(s) 88, 235
HinP1I GCGC 2 cut(s) 88, 235
HinfI GANTC 2 cut(s) 93, 173
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 80, 178, 198
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 232, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 320
HpyF3I CTNAG 2 cut(s) 197, 290
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 318
HspAI GCGC 2 cut(s) 88, 235
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 42, 81, 277, 338, 343
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 2 cut(s) 170, 272
MaeII ACGT 1 cut(s) 10
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 374
MluCI AATT 2 cut(s) 215, 243
MlyI GAGTC 2 cut(s) 102, 167
MnlI CCTC 6 cut(s) 70, 109, 184, 192, 217, 326
MseI TTAA 2 cut(s) 138, 254
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 306
MvnI CGCG 2 cut(s) 88, 134
MwoI GCNNNNNNNGC 2 cut(s) 246, 320
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 54, 87, 234, 239
PleI GAGTC 2 cut(s) 101, 167
PpsI GAGTC 2 cut(s) 101, 167
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 138, 254
SatI GCNGC 4 cut(s) 53, 86, 233, 238
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 2 cut(s) 102, 167
SetI ASST 3 cut(s) 13, 296, 337
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 2 cut(s) 215, 243
SsiI CCGC 6 cut(s) 53, 86, 134, 221, 238, 265
SspMI CTAG 2 cut(s) 170, 272
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 215, 243
TauI GCSGC 3 cut(s) 55, 88, 240
Tru1I TTAA 2 cut(s) 138, 254
Tru9I TTAA 2 cut(s) 138, 254
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 232
TspRI CASTG 1 cut(s) 36
XapI RAATTY 2 cut(s) 215, 243
XspI CTAG 2 cut(s) 170, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.