RLG00000023283

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000951
Physical Location & Seq
Forward (+)
21131443 .. 21132457
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023283

Sequence Viewer

Length: 306 bp
ATGAGTAAGGTTGATGACGGGTCGTCTCCAATCGGGTCGGAGTCTTATCGGACTCCGTCTCCGTTTAATCGGAGCAATTCGTCAATTTGTTTCCGACCGCTCAGAGCTGCTGCCCCTGCCCTAAAATCCCAACTCGGATTTCTCGATGACGTGGCTGTCAATCTCAGTAGGGTTTTCGTACTCTCTGTCCTAGATTCCGAGTTTGTTCTCAAGGCCCTCAGGACAGAACGCGAAAAATTTGCAGAAGAATTGCAACGCCAGAAGATCCGTACTCTAATGTCCATGCGGCATATGGCAGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

9.73

Isoelectric Point (pI)

66.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 100
AccII CGCG 1 cut(s) 231
AciI CCGC 2 cut(s) 98, 286
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 180, 271
AhdI GACNNNNNGTC 1 cut(s) 22
AjiI CACGTC 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 30, 63
AlwI GGATC 1 cut(s) 259
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 218
BbvI GCAGC 2 cut(s) 94, 97
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcoDI GTCTC 2 cut(s) 30, 63
BfaI CTAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 3 cut(s) 108, 111, 287
BlsI GCNGC 3 cut(s) 109, 112, 288
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse21I CCTNAGG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 115, 178, 232
BseXI GCAGC 2 cut(s) 94, 97
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 98
BsmAI GTCTC 2 cut(s) 30, 63
BsmBI CGTCTC 2 cut(s) 30, 63
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 2 cut(s) 98, 286
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 3 cut(s) 114, 177, 231
BspFNI CGCG 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 100
BssMI GATC 1 cut(s) 264
BstDEI CTNAG 3 cut(s) 101, 164, 218
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 30, 63
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 94, 97
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 1 cut(s) 215
BtrI CACGTC 1 cut(s) 151
BveI ACCTGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 179, 270
CviAII CATG 1 cut(s) 283
CviJI RGCY 3 cut(s) 107, 155, 215
CviKI_1 RGCY 3 cut(s) 107, 155, 215
CviQI GTAC 2 cut(s) 179, 270
DdeI CTNAG 3 cut(s) 101, 164, 218
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
DrdI GACNNNNNNGTC 1 cut(s) 155
DriI GACNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 155
Eam1105I GACNNNNNGTC 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 214
Esp3I CGTCTC 2 cut(s) 30, 63
FaeI CATG 1 cut(s) 286
FaiI YATR 3 cut(s) 284, 291, 293
FatI CATG 1 cut(s) 282
FauNDI CATATG 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 108, 111, 287
Fsp4HI GCNGC 3 cut(s) 108, 111, 287
FspBI CTAG 1 cut(s) 191
GluI GCNGC 3 cut(s) 108, 111, 287
HaeIII GGCC 1 cut(s) 215
Hin1II CATG 1 cut(s) 286
HinfI GANTC 3 cut(s) 41, 52, 194
Hpy188I TCNGA 7 cut(s) 40, 51, 72, 95, 104, 137, 199
Hpy188III TCNNGA 3 cut(s) 143, 220, 303
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 242, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 101, 164, 218
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 129, 205, 272, 282
Lsp1109I GCAGC 2 cut(s) 94, 97
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 150
MalI GATC 1 cut(s) 266
MbiI CCGCTC 1 cut(s) 100
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 257, 274
MflI RGATCY 1 cut(s) 264
MluCI AATT 4 cut(s) 76, 84, 236, 248
MlyI GAGTC 2 cut(s) 46, 50
MmeI TCCRAC 2 cut(s) 18, 118
MnlI CCTC 1 cut(s) 227
MseI TTAA 1 cut(s) 66
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeI CATATG 1 cut(s) 291
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 109, 112, 288
PleI GAGTC 2 cut(s) 46, 49
PpsI GAGTC 2 cut(s) 46, 49
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 264
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 2 cut(s) 180, 271
RsaNI GTAC 2 cut(s) 179, 270
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 3 cut(s) 108, 111, 287
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 46, 50
SetI ASST 4 cut(s) 12, 109, 153, 301
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 76, 84, 236, 248
SsiI CCGC 2 cut(s) 98, 286
SspMI CTAG 1 cut(s) 191
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 144
TasI AATT 4 cut(s) 76, 84, 236, 248
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 2 cut(s) 107, 110
TspGWI ACGGA 3 cut(s) 45, 51, 257
Tth111I GACNNNGTC 1 cut(s) 55
XapI RAATTY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.