Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

30285005 .. 30288342

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG312800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGCCTCCCAGTGAAGCTTGAGAGTTCTTCCTTGTGTTTGGTACCCTCAGATTCACAGCAAGGTACTCCACCACCACTGGAATCGCAACTATCCTCATCGCCGACGCCCCCGCACAGAGGCAGAGGCAGTGGCAGAGCCACCCGAAAATGCCAAATCGGTTCAGTCGACGACGATGTCAGGGTTAATCTAGAAAGGGTTTTCGCCCTATCTTGGTTAGACTCCGACTTTATCCTCGAGGCCCTGAGGACAGAACGGAAACAATTCGCCGAGGAATTGCAACGCCGCAAGATTCGGATTCTAATGTCTATGTGGTTTCGAAACCTATTGGGTAATGCAAGGACCGAATTGTTAGCCTTGTCAAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.79

Weight (kDa)

9.58

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AbsI	CCTCGAGG	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	2 cut(s)	113, 286
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	2 cut(s)	45, 67
AfiI	CCNNNNNNNGG	2 cut(s)	119, 213
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	4, 240
Asp700I	GAANNNNTTC	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	43
AspS9I	GGNCC	3 cut(s)	4, 241, 342
AsuII	TTCGAA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	342
AxyI	CCTNAGG	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	4, 241, 342
BmiI	GGNNCC	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 213
Bse1I	ACTGG	2 cut(s)	11, 84
Bse21I	CCTNAGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	119, 213
BseMII	CTCAG	2 cut(s)	63, 236
BseNI	ACTGG	2 cut(s)	11, 84
BshFI	GGCC	2 cut(s)	6, 242
BshNI	GGYRCC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	119, 213
BsnI	GGCC	2 cut(s)	6, 242
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	319
BspACI	CCGC	2 cut(s)	113, 286
BspANI	GGCC	2 cut(s)	6, 242
BspCNI	CTCAG	2 cut(s)	62, 237
BspLI	GGNNCC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	11, 84
BssECI	CCNNGG	1 cut(s)	270
BssNI	GRCGYC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	49, 245
Bsu36I	CCTNAGG	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	6, 242
BtgZI	GCGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	18, 77, 136
Cfr13I	GGNCC	3 cut(s)	4, 241, 342
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	44, 66
CviJI	RGCY	6 cut(s)	6, 19, 140, 242, 356, 368
CviKI_1	RGCY	6 cut(s)	6, 19, 140, 242, 356, 368
CviQI	GTAC	2 cut(s)	44, 66
DdeI	CTNAG	2 cut(s)	49, 245
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	241
FaiI	YATR	1 cut(s)	311
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	6, 242
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	53, 83, 221, 292, 298
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	52, 226, 297
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	3 cut(s)	109, 173, 176
HpyCH4V	TGCA	2 cut(s)	280, 338
HpyF3I	CTNAG	2 cut(s)	49, 245
Hsp92I	GRCGYC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	24, 65, 166, 257
MaeI	CTAG	1 cut(s)	191
MboII	GAAGA	1 cut(s)	21
MluCI	AATT	3 cut(s)	263, 275, 347
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	9 cut(s)	17, 58, 106, 113, 119, 232, 240, 245, 265
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	53, 83, 292, 298
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	4, 241, 342
PspXI	VCTCGAGB	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	45, 67
RsaNI	GTAC	2 cut(s)	44, 66
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	286
Sau96I	GGNCC	3 cut(s)	4, 241, 342
SchI	GAGTC	1 cut(s)	215
SetI	ASST	3 cut(s)	21, 67, 327
Sfr274I	CTCGAG	1 cut(s)	236
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	20, 236
SmoI	CTYRAG	2 cut(s)	20, 236
Sse9I	AATT	3 cut(s)	263, 275, 347
SsiI	CCGC	2 cut(s)	113, 286
SspMI	CTAG	1 cut(s)	191
TaqI	TCGA	3 cut(s)	168, 237, 319
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	263, 275, 347
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	4 cut(s)	53, 83, 292, 298
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	3 cut(s)	18, 84, 136
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	18, 84, 136
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.