Rh7CG343300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000951
Physical Location & Seq
Reverse (-)
38630607 .. 38631082
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG343300.1

Sequence Viewer

Length: 333 bp
ATGATATCTGCTTGCGTCATAAGTAAGGTTGATGACGGGTCGTCTCCAATCGGGTCGGAGTCTTATCAGACTCCGTCTCCGTTTAATCGGAGCAATTCGTCGATTTGCTTCCGACCGCCCAGAGCTGCTGCCCCTGCCCTAAAATCCCAACCCGGATTTCTCGATGACGTGGCTGTCAATCTCAGTAGGGTTTTCGTACTCTCTGTCCTAGATTCCGAGTTTGTTCTCGAGGCCCTCAGGACAGAACGCGAAAAATTCGCAAAAGAATTGCAACGCCAGAAGATTCGTACTCTAATGTCCATGCGGTTACTAACCCAACAACAATCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

9.18

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccII CGCG 1 cut(s) 249
AciI CCGC 2 cut(s) 116, 304
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 2 cut(s) 198, 289
AhdI GACNNNNNGTC 1 cut(s) 40
AjiI CACGTC 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 81
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 125, 128
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 153
AvaI CYCGRG 1 cut(s) 227
AxyI CCTNAGG 1 cut(s) 236
BbvI GCAGC 2 cut(s) 112, 115
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 48, 81
BfaI CTAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 126, 129
BlsI GCNGC 2 cut(s) 127, 130
Bme1390I CCNGG 1 cut(s) 153
BmeRI GACNNNNNGTC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse21I CCTNAGG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 196, 250
BseXI GCAGC 2 cut(s) 112, 115
Bsh1236I CGCG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 48, 81
BsmBI CGTCTC 2 cut(s) 48, 81
BsnI GGCC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 227
BspACI CCGC 2 cut(s) 116, 304
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 2 cut(s) 195, 249
BspFNI CGCG 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 182, 236
BstFNI CGCG 1 cut(s) 249
BstMAI GTCTC 2 cut(s) 48, 81
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 112, 115
Bsu36I CCTNAGG 1 cut(s) 236
BsuRI GGCC 1 cut(s) 233
BtrI CACGTC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 197, 288
CviAII CATG 1 cut(s) 301
CviJI RGCY 3 cut(s) 125, 173, 233
CviKI_1 RGCY 3 cut(s) 125, 173, 233
CviQI GTAC 2 cut(s) 197, 288
DdeI CTNAG 2 cut(s) 182, 236
DrdI GACNNNNNNGTC 1 cut(s) 173
DriI GACNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 232
EcoRV GATATC 1 cut(s) 6
Esp3I CGTCTC 2 cut(s) 48, 81
FaeI CATG 1 cut(s) 304
FaiI YATR 2 cut(s) 20, 302
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 126, 129
Fsp4HI GCNGC 2 cut(s) 126, 129
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 126, 129
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 4
Hin1II CATG 1 cut(s) 304
HinfI GANTC 4 cut(s) 59, 70, 212, 283
HpaII CCGG 1 cut(s) 153
Hpy188I TCNGA 5 cut(s) 58, 69, 90, 113, 217
Hpy188III TCNNGA 3 cut(s) 161, 227, 238
Hpy99I CGWCG 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 182, 236
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 304
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 133, 147, 166, 223, 290
Lsp1109I GCAGC 2 cut(s) 112, 115
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 306
MboII GAAGA 1 cut(s) 292
MfeI CAATTG 1 cut(s) 328
MluCI AATT 4 cut(s) 94, 254, 266, 328
MlyI GAGTC 2 cut(s) 64, 68
MmeI TCCRAC 2 cut(s) 36, 136
MnlI CCTC 2 cut(s) 223, 245
MseI TTAA 1 cut(s) 84
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 328
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 1 cut(s) 153
NlaIII CATG 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 227
PfeI GAWTC 2 cut(s) 212, 283
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 127, 130
PleI GAGTC 2 cut(s) 64, 67
PpsI GAGTC 2 cut(s) 64, 67
PspPI GGNCC 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 2 cut(s) 198, 289
RsaNI GTAC 2 cut(s) 197, 288
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 126, 129
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 64, 68
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 30, 127, 171
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 94, 254, 266, 328
SsiI CCGC 2 cut(s) 116, 304
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 101, 162, 228
TasI AATT 4 cut(s) 94, 254, 266, 328
TfiI GAWTC 2 cut(s) 212, 283
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 2 cut(s) 125, 128
TspGWI ACGGA 2 cut(s) 63, 69
Tth111I GACNNNGTC 1 cut(s) 73
XapI RAATTY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.