Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000951

Physical Location & Seq

Genomic Coordinates Reverse (-)

62159770 .. 62160863

Gene Structure 1094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGTAAGGTTGATGACGGGTCGTCTCCAATCGGGTCGGAGTCTTATCGGACTCCGTCTCTGTTTAATGGGAGCAATTCGTCGATTTGCTTCCGACCGCGCAGAGCTGCTACCCCTGCCCTAAAATCCCAACCCGGATTTCTCGATGACGTGGCCGTCAATCTCAGTAGGGTTTTCGTACTCTCTGTCCTAGATTCCGAGTTTGTTCTCGAGGCCCTCAGGACAGAACGCGAAAAATTCGCAGAAGAATTGCAACGCCAGAAGATCCGTACTCTAATGTCCATGTGGAATTCCCTACCCCCTTCAAAAGTTCAGCAATTTTCGAATCTGGTAAATGGTTCAAAGGCTGGGAAGTTAGCAAGAAATGATTTCTGCAGGCAGTTTCGATTAGTTGTTGGGGAGCGGTTGCTGCGTTCTGCAATTCCTGAGATGCGTGGCTCGGAACAAGGTTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0010015 GO:0010101 GO:0010102 GO:0010154 GO:0010228 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST WWE

Protein Analysis

153

Amino Acids

16.96

Weight (kDa)

9.82

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RST	PF12174	96 - 144	2.5e-07	RCD1-SRO-TAF4 (RST) plant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33461 FvH4_6g41810 FvH4_6g41910 FvH4_6g41910
malus_domestica	MD08G1211400.v1.1
rosa_laevigata	RLG00000001363 RLG00000002321 RLG00000002324 RLG00000002337 RLG00000002348 RLG00000002351 RLG00000002356 RLG00000015133 RLG00000015138 RLG00000021019 RLG00000023283
rosa_multiflora	Rmu_sc0001301.1_g000012 Rmu_sc0001539.1_g000006 Rmu_sc0039105.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240210 Rroxscaffold_3G00240480 Rroxscaffold_4G00310990
rosa_rugosa	Rorug02G0463400 Rorug07G0177300 Rorug07G0290300 Rorug07G0290400 Rorug07G0290500 Rorug07G0290600
rosa_samantha	Rh1BG149400 Rh1DG181200 Rh2AG528900 Rh2BG283600 Rh2BG542800 Rh2BG542900 Rh2CG513200 Rh2DG280000 Rh2DG551800 Rh7AG275500 Rh7AG317300 Rh7AG320700 Rh7AG321400 Rh7AG324200 Rh7AG324800 Rh7AG325400 Rh7AG326300 Rh7AG326400 Rh7BG312800 Rh7BG316000 Rh7BG316100 Rh7BG316200 Rh7BG316800 Rh7BG342200 Rh7CG294300 Rh7CG334100 Rh7CG337500 Rh7CG337900 Rh7CG341600 Rh7CG342500 Rh7CG343300 Rh7CG343500 Rh7CG358900 Rh7DG282400
rosa_wichuraiana	Rw2G043730 Rw7G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	403
AccII	CGCG	2 cut(s)	100, 231
AciI	CCGC	2 cut(s)	98, 403
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	236, 289
AfaI	GTAC	2 cut(s)	180, 271
AgsI	TTSAA	2 cut(s)	306, 342
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	30, 63
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	153, 213
ApeKI	GCWGC	2 cut(s)	107, 409
ApoI	RAATTY	2 cut(s)	236, 289
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	135
AsuII	TTCGAA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	94, 396
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	30, 63
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	2 cut(s)	108, 410
BlsI	GCNGC	2 cut(s)	109, 411
Bme1390I	CCNGG	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	135
Bse21I	CCTNAGG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	178, 232, 417
BseXI	GCAGC	2 cut(s)	94, 396
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	100, 231
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	155, 215
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	30, 63
BsmBI	CGTCTC	2 cut(s)	30, 63
BsnI	GGCC	2 cut(s)	155, 215
BsoBI	CYCGRG	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	2 cut(s)	98, 403
BspANI	GGCC	2 cut(s)	155, 215
BspCNI	CTCAG	3 cut(s)	177, 231, 418
BspFNI	CGCG	2 cut(s)	100, 231
BspMAI	CTGCAG	1 cut(s)	377
BspPI	GGATC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	403
BssMI	GATC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	164, 218, 426, 456
BstFNI	CGCG	2 cut(s)	100, 231
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	2 cut(s)	30, 63
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 409
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	2 cut(s)	100, 231
BstV1I	GCAGC	2 cut(s)	94, 396
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	155, 215
BtrI	CACGTC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	179, 270
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	5 cut(s)	107, 155, 215, 347, 438
CviKI_1	RGCY	5 cut(s)	107, 155, 215, 347, 438
CviQI	GTAC	2 cut(s)	179, 270
DdeI	CTNAG	4 cut(s)	164, 218, 426, 456
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
DrdI	GACNNNNNNGTC	1 cut(s)	155
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	289
Esp3I	CGTCTC	2 cut(s)	30, 63
FaeI	CATG	1 cut(s)	286
FaiI	YATR	1 cut(s)	284
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	108, 410
Fsp4HI	GCNGC	2 cut(s)	108, 410
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	108, 410
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	155, 215
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	41, 52, 194, 325
HpaII	CCGG	1 cut(s)	135
Hpy188I	TCNGA	5 cut(s)	40, 51, 95, 199, 442
Hpy188III	TCNNGA	4 cut(s)	143, 209, 220, 425
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	253, 375, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 409
HpyF3I	CTNAG	4 cut(s)	164, 218, 426, 456
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	72, 400
LpnPI	CCDG	8 cut(s)	129, 148, 205, 272, 314, 333, 361, 438
Lsp1109I	GCAGC	2 cut(s)	94, 396
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	266
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	257, 274
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	6 cut(s)	76, 236, 248, 289, 317, 420
MlyI	GAGTC	2 cut(s)	46, 50
MmeI	TCCRAC	2 cut(s)	18, 118
MnlI	CCTC	2 cut(s)	205, 227
MseI	TTAA	1 cut(s)	66
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	100, 231
MwoI	GCNNNNNNNGC	2 cut(s)	116, 409
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	194, 325
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	109, 411
PleI	GAGTC	2 cut(s)	46, 49
PpsI	GAGTC	2 cut(s)	46, 49
PspFI	CCCAGC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	180, 271
RsaNI	GTAC	2 cut(s)	179, 270
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	108, 410
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	46, 50
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	4 cut(s)	12, 109, 153, 451
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	373
Sfr274I	CTCGAG	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	6 cut(s)	76, 236, 248, 289, 317, 420
SsiI	CCGC	2 cut(s)	98, 403
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	5 cut(s)	83, 144, 210, 323, 385
TasI	AATT	6 cut(s)	76, 236, 248, 289, 317, 420
TfiI	GAWTC	2 cut(s)	194, 325
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	107, 409
TspGWI	ACGGA	2 cut(s)	45, 257
Tth111I	GACNNNGTC	1 cut(s)	55
XapI	RAATTY	2 cut(s)	236, 289
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.