Rh7CG358900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000951
Physical Location & Seq
Forward (+)
44502091 .. 44502378
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG358900.1

Sequence Viewer

Length: 288 bp
ATGTCTTATTCTACATCTGGGGAGCAACATGATCACTTAGCTACTCCACTTCCACCACCCTTAGTATCGCCGCAATCCTCATCGCCGATTTGTTTCCGATTGCCGCGCAGAGTCGCCTCAAAATCCAAAATCAATTCTGTCGATGACATCGCGGTTAATCTCAATAGGGTTCTTGCCCTAGCTTGGCTAGACTCGGAGTTTGTGCTTGAGGCTTTGAGGAGAGAACGCCAAGAATTTGCGGAGGAGTTGCAGCGCCGCAAAATTCGCACTTTAATGTCTAGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.91

Weight (kDa)

9.99

Isoelectric Point (pI)

88.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 106, 152
AciI CCGC 6 cut(s) 71, 104, 152, 239, 256, 283
AcsI RAATTY 2 cut(s) 233, 261
AfiI CCNNNNNNNGG 1 cut(s) 183
AluBI AGCT 2 cut(s) 41, 182
AluI AGCT 2 cut(s) 41, 182
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 2 cut(s) 233, 261
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 2 cut(s) 108, 255
BbvI GCAGC 1 cut(s) 262
BclI TGATCA 1 cut(s) 31
BfaI CTAG 3 cut(s) 179, 188, 279
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 4 cut(s) 71, 104, 251, 256
BlsI GCNGC 4 cut(s) 72, 105, 252, 257
BpuEI CTTGAG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 232, 257
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 2 cut(s) 106, 152
BslI CCNNNNNNNGG 1 cut(s) 183
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 6 cut(s) 71, 104, 152, 239, 256, 283
BspFNI CGCG 2 cut(s) 106, 152
BssMI GATC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 37, 61
BstFNI CGCG 2 cut(s) 106, 152
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 2 cut(s) 108, 255
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstUI CGCG 2 cut(s) 106, 152
BstV1I GCAGC 1 cut(s) 262
BtgZI GCGATG 2 cut(s) 66, 133
CfoI GCGC 2 cut(s) 108, 255
CviAII CATG 1 cut(s) 29
CviJI RGCY 4 cut(s) 41, 182, 187, 212
CviKI_1 RGCY 4 cut(s) 41, 182, 187, 212
DdeI CTNAG 2 cut(s) 37, 61
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FatI CATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 71, 104, 251, 256
Fsp4HI GCNGC 4 cut(s) 71, 104, 251, 256
FspBI CTAG 3 cut(s) 179, 188, 279
GlaI GCGC 2 cut(s) 107, 254
GluI GCNGC 4 cut(s) 71, 104, 251, 256
HaeII RGCGCY 1 cut(s) 256
HhaI GCGC 2 cut(s) 108, 255
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 2 cut(s) 106, 253
HinP1I GCGC 2 cut(s) 106, 253
HinfI GANTC 2 cut(s) 111, 191
Hpy188I TCNGA 2 cut(s) 98, 196
HpyCH4V TGCA 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 37, 61
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 2 cut(s) 106, 253
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 1 cut(s) 3
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 3 cut(s) 179, 188, 279
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MluCI AATT 3 cut(s) 133, 233, 261
MlyI GAGTC 2 cut(s) 120, 185
MnlI CCTC 5 cut(s) 88, 127, 202, 210, 235
MseI TTAA 2 cut(s) 156, 272
MslI CAYNNNNRTG 1 cut(s) 272
MvnI CGCG 2 cut(s) 106, 152
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 32
PkrI GCNGC 4 cut(s) 72, 105, 252, 257
PleI GAGTC 2 cut(s) 119, 185
PpsI GAGTC 2 cut(s) 119, 185
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 2 cut(s) 156, 272
SatI GCNGC 4 cut(s) 71, 104, 251, 256
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 2 cut(s) 120, 185
SetI ASST 2 cut(s) 43, 184
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 133, 233, 261
SsiI CCGC 6 cut(s) 71, 104, 152, 239, 256, 283
SspMI CTAG 3 cut(s) 179, 188, 279
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 133, 233, 261
TauI GCSGC 3 cut(s) 73, 106, 258
Tru1I TTAA 2 cut(s) 156, 272
Tru9I TTAA 2 cut(s) 156, 272
TseI GCWGC 1 cut(s) 250
XapI RAATTY 2 cut(s) 233, 261
XspI CTAG 3 cut(s) 179, 188, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.