FvH4_6g21650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000866
Physical Location & Seq
Reverse (-)
15202266 .. 15202821
556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21650.t1

Sequence Viewer

Length: 357 bp
ATGGCATACTCAAAGACTATTCTGCTTGTTGTCTTTGCCGTTCTCCTCATCACTGCTGAGGTCTCAGCTCATCGTGATCTATCTGAGACAACAGCTGCAACTACTGATGGCAGATCGGGATACAACAGAGGAGAGGGAGGAGGCAAGGGAGGAATATTTTCGGATGAAGATGGAAGAGGGGGATACAACAAGGGAAATGGAGGAAACGGAGGAGGCAAGGGAGGAAACGGAGGAGGCAAGGGAGGAAATGGAGGAGGCAAGGGAGGAAACGGAGGAAGCAAGGGAGGAAATGGAGGAGGCAAGGGAGGAAACGGAGGAAACGGAGGGGGAGAGCATGGACCCGAAACCCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

11.04

Weight (kDa)

9.0

Isoelectric Point (pI)

13.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 68, 95
AluI AGCT 2 cut(s) 68, 95
Alw26I GTCTC 2 cut(s) 67, 80
ApeKI GCWGC 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 101, 164
BceAI ACGGC 1 cut(s) 23
BciVI GTATCC 2 cut(s) 113, 176
BcoDI GTCTC 2 cut(s) 67, 80
BfaI CTAG 1 cut(s) 355
BfuI GTATCC 2 cut(s) 113, 176
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 340
Bpu10I CCTNAGC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 67
BseGI GGATG 1 cut(s) 169
BseMII CTCAG 3 cut(s) 48, 75, 78
BseRI GAGGAG 7 cut(s) 35, 144, 153, 225, 246, 267, 309
BseXI GCAGC 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 67, 80
Bso31I GGTCTC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 76, 113
BspCNI CTCAG 3 cut(s) 49, 76, 77
BspLI GGNNCC 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 67
BssMI GATC 2 cut(s) 76, 113
Bst6I CTCTTC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 57, 64, 84
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 79, 116
BstMAI GTCTC 2 cut(s) 67, 80
BstMBI GATC 2 cut(s) 76, 113
BstV1I GCAGC 1 cut(s) 82
BsuI GTATCC 2 cut(s) 113, 176
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 338
CviAII CATG 1 cut(s) 335
CviJI RGCY 2 cut(s) 68, 95
CviKI_1 RGCY 2 cut(s) 68, 95
DdeI CTNAG 3 cut(s) 57, 64, 84
DpnI GATC 2 cut(s) 78, 115
DpnII GATC 2 cut(s) 76, 113
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 338
FaeI CATG 1 cut(s) 338
FaiI YATR 2 cut(s) 7, 336
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 355
GluI GCNGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 85, 163
Hpy188III TCNNGA 2 cut(s) 74, 117
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 3 cut(s) 57, 64, 84
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 2 cut(s) 76, 113
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 355
MalI GATC 2 cut(s) 78, 115
MboI GATC 2 cut(s) 76, 113
MboII GAAGA 2 cut(s) 179, 186
MroXI GAANNNNTTC 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 95
NdeII GATC 2 cut(s) 76, 113
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 95
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 76, 113
Sau96I GGNCC 1 cut(s) 338
SetI ASST 3 cut(s) 63, 70, 97
SinI GGWCC 1 cut(s) 338
SspI AATATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 355
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 5 cut(s) 222, 243, 285, 327, 336
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.