RLG00000034095

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000866
Physical Location & Seq
Forward (+)
36698650 .. 36699843
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034095

Sequence Viewer

Length: 384 bp
ATGGCATTCTCAAAGACTATTCTTCTCGTTGCCCTTGTCTTTGCTGTTCTCCTCATCTCCTCTGAGGTCTCAGCTTATGTACAGAAAATTCTGACCACTTCCACGGCAACGATCATGGACATGGTGGCCATGGACATGGAGGACATGGACATGGAGGCGAAGGAGGACATGGACATGGAGGACATGGAGGACACGGAGGACATGGTGGCCATGGAGGCCGTGGAGGGCACGGAGGGCATGGACCTGACCCGCCCGTACTGGGCATCTGACATCGTCCTTGCCATGAACGGAGCGGTGGAATATGAACCAAACCGTCATCATAAGAGCAAAGGCAGCTTGAAGGCATCGAGGACAGAAGAAGGTGGAGATGGACGAGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.03

Weight (kDa)

4.17

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 293
AciI CCGC 2 cut(s) 250, 293
AcoI YGGCCR 2 cut(s) 126, 207
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 2 cut(s) 81, 257
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 1 cut(s) 340
AluBI AGCT 2 cut(s) 74, 336
AluI AGCT 2 cut(s) 74, 336
Alw26I GTCTC 2 cut(s) 73, 369
AoxI GGCC 3 cut(s) 126, 207, 216
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 2 cut(s) 128, 209
BbvI GCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 362
BceAI ACGGC 2 cut(s) 120, 203
BcoDI GTCTC 2 cut(s) 73, 369
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 2 cut(s) 272, 353
BmuI ACTGGG 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 4 cut(s) 102, 129, 210, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 4 cut(s) 102, 129, 210, 219
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 54, 84
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 2 cut(s) 41, 49
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 345
BshFI GGCC 3 cut(s) 128, 209, 218
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 73, 369
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 3 cut(s) 128, 209, 218
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 1 cut(s) 111
Bsp19I CCATGG 2 cut(s) 129, 210
BspACI CCGC 2 cut(s) 250, 293
BspANI GGCC 3 cut(s) 128, 209, 218
BspCNI CTCAG 2 cut(s) 55, 83
BspTNI GGTCTC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 102, 129, 210, 219
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 129, 210
Bst4CI ACNGT 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 63, 70, 381
BstDSI CCRYGG 4 cut(s) 102, 129, 210, 219
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 73, 369
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 215, 234, 333
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 3 cut(s) 128, 209, 218
BtgI CCRYGG 4 cut(s) 102, 129, 210, 219
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 80, 256
CviJI RGCY 5 cut(s) 74, 128, 209, 218, 336
CviKI_1 RGCY 5 cut(s) 74, 128, 209, 218, 336
CviQI GTAC 2 cut(s) 80, 256
DdeI CTNAG 3 cut(s) 63, 70, 381
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EaeI YGGCCR 2 cut(s) 126, 207
Eco130I CCWWGG 2 cut(s) 129, 210
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 129, 210
ErhI CCWWGG 2 cut(s) 129, 210
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 334
HaeIII GGCC 3 cut(s) 128, 209, 218
HinfI GANTC 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 64, 93, 268
HpyAV CCTTC 3 cut(s) 154, 334, 353
HpyCH4III ACNGT 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 234, 333
HpyF3I CTNAG 3 cut(s) 63, 70, 381
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 2 cut(s) 244, 257
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 272, 353
MalI GATC 1 cut(s) 113
MbiI CCGCTC 1 cut(s) 293
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 14, 368
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 2 cut(s) 128, 209
MluCI AATT 1 cut(s) 87
MluNI TGGCCA 2 cut(s) 128, 209
MlyI GAGTC 1 cut(s) 371
Mox20I TGGCCA 2 cut(s) 128, 209
MscI TGGCCA 2 cut(s) 128, 209
MslI CAYNNNNRTG 4 cut(s) 119, 134, 149, 173
Msp20I TGGCCA 2 cut(s) 128, 209
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 215, 234, 333
NcoI CCATGG 2 cut(s) 129, 210
NdeII GATC 1 cut(s) 111
PctI GAATGC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 2 cut(s) 81, 257
RsaNI GTAC 2 cut(s) 80, 256
RseI CAYNNNNRTG 4 cut(s) 119, 134, 149, 173
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 371
SduI GDGCHC 1 cut(s) 230
SetI ASST 5 cut(s) 69, 76, 246, 338, 364
SfaNI GCATC 2 cut(s) 272, 353
SfiI GGCCNNNNNGGCC 1 cut(s) 215
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 4 cut(s) 119, 134, 149, 173
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 250, 293
StyI CCWWGG 2 cut(s) 129, 210
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 347
TasI AATT 1 cut(s) 87
TatI WGTACW 1 cut(s) 79
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 299, 318
TspGWI ACGGA 3 cut(s) 209, 245, 303
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.