Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Forward (+)

175528 .. 177355

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgaaaattctgaccacttccacggcaacgatcatggacatggtggccatggacatggaggacatggacatggaggcgaaggaggacatggacatggaggacatggaggacacggaggacatggtggccatggaggccgtggagggcacggagggcatggacctggtgctcatgaaactgagaattagataccgtttgctgcctcgcctaatgtcaggcgtgctagctgcgcgcatgagtattattaaccagacccgcccgtaccgggcatctgacatcgtccttgccatgaacggagcggtggaatatgaaccaaaccgtcatcataagagcaaaggcagcttgaaagcatcaagaaggacagcaagaagtactgatagtactattactgatgataccatggatgttgctctgcttgttcaactcacggtgtttaactgtagaggaattgcaattgcagtctctctatcacacatgattgcctttgcatcagctttgtgcacatttgtccgcagctggaccgccatgactcgtgacaagtatgatcacaatctattagtgcttccagagttcattagaccgtctgagctgccacttcggacatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

202

Amino Acids

22.8

Weight (kDa)

5.14

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	256, 299, 511, 522
AcoI	YGGCCR	2 cut(s)	45, 126
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	3 cut(s)	263, 373, 382
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	346, 422
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	5 cut(s)	227, 342, 494, 516, 589
AluI	AGCT	5 cut(s)	227, 342, 494, 516, 589
Alw21I	GWGCWC	2 cut(s)	171, 503
Alw26I	GTCTC	1 cut(s)	466
Alw44I	GTGCAC	1 cut(s)	499
AoxI	GGCC	3 cut(s)	45, 126, 135
ApaLI	GTGCAC	1 cut(s)	499
ApeKI	GCWGC	5 cut(s)	199, 227, 339, 513, 589
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	2 cut(s)	232, 234
AspS9I	GGNCC	2 cut(s)	160, 519
AsuC2I	CCSGG	1 cut(s)	266
AsuNHI	GCTAGC	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	160, 519
BaeGI	GKGCMC	2 cut(s)	149, 503
BalI	TGGCCA	2 cut(s)	47, 128
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	171, 503
BbvI	GCAGC	5 cut(s)	186, 214, 351, 525, 576
BceAI	ACGGC	2 cut(s)	39, 122
BciT130I	CCWGG	1 cut(s)	164
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	5 cut(s)	200, 228, 340, 514, 590
BlsI	GCNGC	5 cut(s)	201, 229, 341, 515, 591
BmcAI	AGTACT	2 cut(s)	373, 382
Bme1390I	CCNGG	2 cut(s)	164, 266
Bme18I	GGWCC	2 cut(s)	160, 519
BmgT120I	GGNCC	2 cut(s)	160, 519
BmrFI	CCNGG	2 cut(s)	164, 266
BmsI	GCATC	3 cut(s)	278, 359, 497
BmtI	GCTAGC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	5 cut(s)	21, 48, 129, 138, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	5 cut(s)	21, 48, 129, 138, 399
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	170, 576
BsePI	GCGCGC	1 cut(s)	230
BseSI	GKGCMC	2 cut(s)	149, 503
BseXI	GCAGC	5 cut(s)	186, 214, 351, 525, 576
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	47, 128, 137
BsiHKAI	GWGCWC	2 cut(s)	171, 503
BsiSI	CCGG	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	47, 128, 137
Bsp1286I	GDGCHC	3 cut(s)	149, 171, 503
Bsp143I	GATC	2 cut(s)	30, 544
Bsp19I	CCATGG	3 cut(s)	48, 129, 399
BspACI	CCGC	4 cut(s)	256, 299, 511, 522
BspANI	GGCC	3 cut(s)	47, 128, 137
BspCNI	CTCAG	2 cut(s)	171, 577
BspFNI	CGCG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	171
BspOI	GCTAGC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	21, 48, 129, 138, 399
BssHII	GCGCGC	1 cut(s)	230
BssMI	GATC	2 cut(s)	30, 544
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	3 cut(s)	48, 129, 399
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	5 cut(s)	194, 320, 430, 440, 582
BstC8I	GCNNGC	3 cut(s)	221, 225, 232
BstDEI	CTNAG	2 cut(s)	179, 585
BstDSI	CCRYGG	5 cut(s)	21, 48, 129, 138, 399
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	232, 234
BstKTI	GATC	2 cut(s)	33, 547
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	30, 544
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 153, 229, 339
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	162, 264
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	2 cut(s)	149, 503
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	5 cut(s)	186, 214, 351, 525, 576
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	47, 128, 137
BtgI	CCRYGG	5 cut(s)	21, 48, 129, 138, 399
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	221, 225, 232
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	2 cut(s)	232, 234
Cfr13I	GGNCC	2 cut(s)	160, 519
CsiI	ACCWGGT	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	262, 372, 381
CviJI	RGCY	8 cut(s)	47, 128, 137, 227, 342, 494, 516, 589
CviKI_1	RGCY	8 cut(s)	47, 128, 137, 227, 342, 494, 516, 589
CviQI	GTAC	3 cut(s)	262, 372, 381
DdeI	CTNAG	2 cut(s)	179, 585
DpnI	GATC	2 cut(s)	32, 546
DpnII	GATC	2 cut(s)	30, 544
EaeI	YGGCCR	2 cut(s)	45, 126
Eco130I	CCWWGG	3 cut(s)	48, 129, 399
Eco47I	GGWCC	2 cut(s)	160, 519
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	3 cut(s)	48, 129, 399
ErhI	CCWWGG	3 cut(s)	48, 129, 399
FauI	CCCGC	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	5 cut(s)	200, 228, 340, 514, 590
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	5 cut(s)	200, 228, 340, 514, 590
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	2 cut(s)	231, 233
GluI	GCNGC	5 cut(s)	200, 228, 340, 514, 590
HaeIII	GGCC	3 cut(s)	47, 128, 137
HapII	CCGG	1 cut(s)	265
HhaI	GCGC	2 cut(s)	232, 234
Hin6I	GCGC	2 cut(s)	230, 232
HinP1I	GCGC	2 cut(s)	230, 232
HinfI	GANTC	1 cut(s)	529
HpaII	CCGG	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	4 cut(s)	12, 274, 586, 600
Hpy188III	TCNNGA	4 cut(s)	172, 354, 533, 566
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	2 cut(s)	73, 351
HpyCH4III	ACNGT	5 cut(s)	194, 320, 430, 440, 582
HpyCH4V	TGCA	4 cut(s)	452, 458, 488, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 153, 229, 339
HpyF3I	CTNAG	2 cut(s)	179, 585
HspAI	GCGC	2 cut(s)	230, 232
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	30, 544
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	149, 176, 201, 263, 278, 502, 579
Lsp1109I	GCAGC	5 cut(s)	186, 214, 351, 525, 576
LweI	GCATC	3 cut(s)	278, 359, 497
MabI	ACCWGGT	1 cut(s)	162
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	2 cut(s)	32, 546
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	2 cut(s)	30, 544
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	3 cut(s)	149, 171, 503
MlsI	TGGCCA	2 cut(s)	47, 128
MluCI	AATT	4 cut(s)	6, 183, 447, 453
MluNI	TGGCCA	2 cut(s)	47, 128
MlyI	GAGTC	1 cut(s)	523
Mox20I	TGGCCA	2 cut(s)	47, 128
MscI	TGGCCA	2 cut(s)	47, 128
MseI	TTAA	2 cut(s)	246, 435
MslI	CAYNNNNRTG	4 cut(s)	38, 53, 68, 92
Msp20I	TGGCCA	2 cut(s)	47, 128
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	2 cut(s)	164, 266
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	134, 153, 229, 339
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	3 cut(s)	48, 129, 399
NdeII	GATC	2 cut(s)	30, 544
NheI	GCTAGC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	606
PagI	TCATGA	1 cut(s)	171
PauI	GCGCGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	602
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	201, 229, 341, 515, 591
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	160, 519
PsyI	GACNNNGTC	1 cut(s)	278
PteI	GCGCGC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	516
RsaI	GTAC	3 cut(s)	263, 373, 382
RsaNI	GTAC	3 cut(s)	262, 372, 381
RseI	CAYNNNNRTG	4 cut(s)	38, 53, 68, 92
SaqAI	TTAA	2 cut(s)	246, 435
SatI	GCNGC	5 cut(s)	200, 228, 340, 514, 590
Sau3AI	GATC	2 cut(s)	30, 544
Sau96I	GGNCC	2 cut(s)	160, 519
ScaI	AGTACT	2 cut(s)	373, 382
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	164, 266
SduI	GDGCHC	3 cut(s)	149, 171, 503
SetI	ASST	6 cut(s)	165, 229, 344, 496, 518, 591
SexAI	ACCWGGT	1 cut(s)	162
SfaNI	GCATC	3 cut(s)	278, 359, 497
SfcI	CTRYAG	1 cut(s)	439
SfiI	GGCCNNNNNGGCC	1 cut(s)	134
SinI	GGWCC	2 cut(s)	160, 519
SmiMI	CAYNNNNRTG	4 cut(s)	38, 53, 68, 92
Sse9I	AATT	4 cut(s)	6, 183, 447, 453
SsiI	CCGC	4 cut(s)	256, 299, 511, 522
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	162, 264
StyI	CCWWGG	3 cut(s)	48, 129, 399
TaaI	ACNGT	5 cut(s)	194, 320, 430, 440, 582
TasI	AATT	4 cut(s)	6, 183, 447, 453
TatI	WGTACW	2 cut(s)	371, 380
Tru1I	TTAA	2 cut(s)	246, 435
Tru9I	TTAA	2 cut(s)	246, 435
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	5 cut(s)	199, 227, 339, 513, 589
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	5 cut(s)	17, 188, 305, 324, 562
TspGWI	ACGGA	3 cut(s)	128, 164, 309
Tth111I	GACNNNGTC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	160, 519
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	2 cut(s)	373, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.