Rh5AG280600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000866
Physical Location & Seq
Forward (+)
37984753 .. 37985221
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG280600.1

Sequence Viewer

Length: 234 bp
ATGAAAATTCTGACCACTTCCACGGCAACGATCATGGACATGGTGGCCATGGACATGGAGGACATGGACATGGAGGCGAAGGAGGACATGGACATGGAGGACATGGAGGACACGGAGGACATGGTGGGCATGGAGGCCGTGGAGGGCACGGAGGGCACGGACCTGGTGCTCATGAAACTGAGAATTAGATACCGTTCGCTGCCTCGCCTAATGTCAGGCGTGCTAGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

4.05

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 6
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 171
AoxI GGCC 2 cut(s) 45, 135
ApeKI GCWGC 2 cut(s) 199, 227
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 160
AsuNHI GCTAGC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 2 cut(s) 149, 158
BalI TGGCCA 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 186, 214
BceAI ACGGC 2 cut(s) 39, 122
BciT130I CCWGG 1 cut(s) 164
BfaI CTAG 1 cut(s) 224
BisI GCNGC 2 cut(s) 200, 228
BlsI GCNGC 2 cut(s) 201, 229
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 21, 48, 138
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 21, 48, 138
BseMII CTCAG 1 cut(s) 170
BseSI GKGCMC 2 cut(s) 149, 158
BseXI GCAGC 2 cut(s) 186, 214
BshFI GGCC 2 cut(s) 47, 137
BsiHKAI GWGCWC 1 cut(s) 171
BsnI GGCC 2 cut(s) 47, 137
Bsp1286I GDGCHC 3 cut(s) 149, 158, 171
Bsp143I GATC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 2 cut(s) 47, 137
BspCNI CTCAG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 171
BspOI GCTAGC 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 21, 48, 138
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 221, 225
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 3 cut(s) 21, 48, 138
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstSLI GKGCMC 2 cut(s) 149, 158
BstV1I GCAGC 2 cut(s) 186, 214
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 47, 137
BtgI CCRYGG 3 cut(s) 21, 48, 138
Cac8I GCNNGC 2 cut(s) 221, 225
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 160
CsiI ACCWGGT 1 cut(s) 162
CviJI RGCY 3 cut(s) 47, 137, 227
CviKI_1 RGCY 3 cut(s) 47, 137, 227
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 200, 228
Fsp4HI GCNGC 2 cut(s) 200, 228
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 200, 228
HaeIII GGCC 2 cut(s) 47, 137
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 179
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 3 cut(s) 149, 176, 201
Lsp1109I GCAGC 2 cut(s) 186, 214
MabI ACCWGGT 1 cut(s) 162
MaeI CTAG 1 cut(s) 224
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 149, 158, 171
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 6, 183
MluNI TGGCCA 1 cut(s) 47
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MslI CAYNNNNRTG 4 cut(s) 38, 53, 68, 92
Msp20I TGGCCA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 153
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 223
PagI TCATGA 1 cut(s) 171
PkrI GCNGC 2 cut(s) 201, 229
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspPI GGNCC 1 cut(s) 160
RseI CAYNNNNRTG 4 cut(s) 38, 53, 68, 92
SatI GCNGC 2 cut(s) 200, 228
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 3 cut(s) 149, 158, 171
SetI ASST 2 cut(s) 165, 229
SexAI ACCWGGT 1 cut(s) 162
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 4 cut(s) 38, 53, 68, 92
Sse9I AATT 2 cut(s) 6, 183
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 194
TasI AATT 2 cut(s) 6, 183
TseI GCWGC 2 cut(s) 199, 227
TspDTI ATGAA 2 cut(s) 17, 188
TspGWI ACGGA 3 cut(s) 128, 164, 173
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 6
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.