Rorug01G0124600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000866
Physical Location & Seq
Forward (+)
21397587 .. 21398973
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0124600.1

Sequence Viewer

Length: 1347 bp
ATGGCAAATTTATCAGTGAAGAAAGTTGAGGTCTGCAGGGTGGCACCAAAACCAGGTTCACCAGAGAACCAGTCACTTCCTCTAACATTCTTCGACTTATTGTGGCTCCGTTTTCAACCCGTAGAACGCCTCTACTTTTACCAAACCTCTTCCACCGATTCTGTACTTTCCAAACTCAAAACCTCCCTATCTCTCACTCTCCAACACTTCCTACCTCTCGCCGGAAACCTCACTTGGCCCCAAGACTCCCTCAAACCCGTTCTAAGCTACGTTCAAGGTGACGCCGTTTCACTCACCGTAGCTGAGTCCGATGTAGATTTCGACCACCTCATTAACAGTATCTTTCTTGCAGCCCAAGATTTCAGTCCTCTTGTTCCTCAGTTGGATGTGACTGATGAGCGACCCGCGGCGATGGCATTGCAAATCACTGTCTATCCCAACCGCGGATTCTCCATCGGAACGACCATGCACCACGCAATCCTTGACGGCAAAACTTGGACCTCGTTTGTCAAAGCATGGGCTCATATATGCAAATATGAAGAAGCACAGGCTCTGCCTTCGTCTTTGGTACCCTTCTACGACAGAAGGGTCGTCAAGGACCCGGCCGGGTTCGCAGAACTCTACTCCAGCCAACACCAAAACAAGGGCAGCCGGACCGACAACAGAAGCTTAAGCATTGCCTCCATCAGTAAAGATCGCAAGGCCCCAGATCAGGAAGACTCGATTCGTGGCATATTCGAGTTCACTCGCGCATTTATACAAACCCTTAGAGGGCATGTCACATCTAAAATGGCTTCTGATTCATCGCTCCATTTGTCAACTTTTTCTCTAGTCTCTGCCTACACATGGGTTTGTATGGTGAAGGCCGAAGAAATCAAAGGGGAGAAGACGGCTCTCATCATCGGGGCGGACTCCAGGTCCCGGTTGGACCCTCCAATACCTGCAACGTATTTTGGTAACTGCATAGTGGGTCGTGTAGCAGTTGCGGAAACAAAAGGGCTATTGGGTGAAGATGGACTGGTTGTAGCTGTGAGTGCAATTACAGAAGCTGTAAGAAGCTTGGAGAAAGGGCTTTTGGATGGGGCAGAGAATTGGGTTTCGAAATTTCTGGATTTTTCGCTGTATGGTAGGACATATTCGATTGCAGGGTCACATAGGTTTGAGGTTTATGATACCGACTTTGGATGGGGAAGGCCTAAAAGGGTTGACGTCATCTCCATTGATAAGACGGGAGCCATTTCTCTTTCGGATAGTAAGAATGGTGTTGGAGGTGTTGAGGTTGGATTGGTTTTGAAGAAACAGTATGCTGAGGCTTTTGATGCTCTGTTTGCTGGCCTAGTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

49.26

Weight (kDa)

6.23

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 440 5.4e-51 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AatII GACGTC 1 cut(s) 1212
Acc36I ACCTGC 1 cut(s) 949
Acc65I GGTACC 1 cut(s) 568
AccB1I GGYRCC 2 cut(s) 43, 568
AccII CGCG 3 cut(s) 407, 444, 750
AciI CCGC 6 cut(s) 405, 407, 442, 444, 908, 986
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 2 cut(s) 7, 1103
AcyI GRCGYC 2 cut(s) 282, 1209
AfaI GTAC 2 cut(s) 165, 570
AfiI CCNNNNNNNGG 8 cut(s) 53, 221, 443, 643, 712, 771, 846, 921
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 3 cut(s) 116, 275, 1294
AhdI GACNNNNNGTC 1 cut(s) 916
AjnI CCWGG 2 cut(s) 52, 914
AjuI GAANNNNNNNTTGG 8 cut(s) 40, 72, 217, 249, 431, 463, 1058, 1090
AluBI AGCT 6 cut(s) 267, 302, 669, 1028, 1049, 1059
AluI AGCT 6 cut(s) 267, 302, 669, 1028, 1049, 1059
Alw26I GTCTC 1 cut(s) 838
AlwNI CAGNNNCTG 2 cut(s) 553, 1049
AoxI GGCC 6 cut(s) 236, 603, 702, 864, 1193, 1333
ApeKI GCWGC 2 cut(s) 350, 648
ApoI RAATTY 2 cut(s) 7, 1103
Asp718I GGTACC 1 cut(s) 568
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 7 cut(s) 237, 498, 598, 654, 703, 918, 928
AsuC2I CCSGG 3 cut(s) 602, 607, 922
AsuHPI GGTGA 5 cut(s) 51, 286, 290, 871, 1019
AsuII TTCGAA 1 cut(s) 1100
AvaII GGWCC 5 cut(s) 498, 598, 654, 918, 928
BanI GGYRCC 2 cut(s) 43, 568
BanII GRGCYC 1 cut(s) 523
BbsI GAAGAC 2 cut(s) 723, 893
BbvCI CCTCAGC 1 cut(s) 1308
BbvI GCAGC 2 cut(s) 362, 660
BccI CCATC 6 cut(s) 406, 461, 692, 1007, 1073, 1179
BceAI ACGGC 3 cut(s) 269, 502, 906
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 54, 916
BcnI CCSGG 3 cut(s) 602, 607, 922
BcoDI GTCTC 1 cut(s) 838
BfaI CTAG 2 cut(s) 830, 1337
BfmI CTRYAG 1 cut(s) 34
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 1 cut(s) 949
BisI GCNGC 3 cut(s) 351, 408, 649
BlsI GCNGC 3 cut(s) 352, 409, 650
Bme1390I CCNGG 5 cut(s) 54, 602, 607, 916, 922
Bme18I GGWCC 5 cut(s) 498, 598, 654, 918, 928
BmeRI GACNNNNNGTC 1 cut(s) 916
BmgT120I GGNCC 7 cut(s) 237, 498, 598, 654, 703, 918, 928
BmiI GGNNCC 9 cut(s) 45, 107, 239, 570, 600, 705, 920, 930, 1234
BmrFI CCNGG 5 cut(s) 54, 602, 607, 916, 922
BmsI GCATC 1 cut(s) 1309
BpiI GAAGAC 2 cut(s) 723, 893
BpmI CTGGAG 2 cut(s) 610, 898
Bpu10I CCTNAGC 1 cut(s) 1308
Bpu14I TTCGAA 1 cut(s) 1100
BpuMI CCSGG 3 cut(s) 602, 607, 922
BsaHI GRCGYC 2 cut(s) 282, 1209
BsaJI CCNNGG 2 cut(s) 405, 442
BsaXI ACNNNNNCTCC 2 cut(s) 1199, 1229
Bsc4I CCNNNNNNNGG 8 cut(s) 53, 221, 443, 643, 712, 771, 846, 921
Bse1I ACTGG 2 cut(s) 70, 1023
Bse3DI GCAATG 2 cut(s) 416, 675
BseBI CCWGG 2 cut(s) 54, 916
BseDI CCNNGG 2 cut(s) 405, 442
BseGI GGATG 3 cut(s) 391, 1084, 1190
BseLI CCNNNNNNNGG 8 cut(s) 53, 221, 443, 643, 712, 771, 846, 921
BseMI GCAATG 2 cut(s) 416, 675
BseMII CTCAG 3 cut(s) 294, 392, 1299
BseNI ACTGG 2 cut(s) 70, 1023
BseX3I CGGCCG 1 cut(s) 603
BseXI GCAGC 2 cut(s) 362, 660
Bsh1236I CGCG 3 cut(s) 407, 444, 750
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 6 cut(s) 238, 605, 704, 866, 1195, 1335
BshNI GGYRCC 2 cut(s) 43, 568
BsiEI CGRYCG 1 cut(s) 606
BsiSI CCGG 5 cut(s) 222, 602, 606, 652, 922
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 8 cut(s) 53, 221, 443, 643, 712, 771, 846, 921
BsmAI GTCTC 1 cut(s) 838
BsmFI GGGAC 1 cut(s) 904
BsnI GGCC 6 cut(s) 238, 605, 704, 866, 1195, 1335
Bsp119I TTCGAA 1 cut(s) 1100
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 2 cut(s) 694, 709
BspACI CCGC 6 cut(s) 405, 407, 442, 444, 908, 986
BspANI GGCC 6 cut(s) 238, 605, 704, 866, 1195, 1335
BspCNI CTCAG 3 cut(s) 295, 391, 1300
BspFNI CGCG 3 cut(s) 407, 444, 750
BspLI GGNNCC 9 cut(s) 45, 107, 239, 570, 600, 705, 920, 930, 1234
BspMAI CTGCAG 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 949
BspT104I TTCGAA 1 cut(s) 1100
BspT107I GGYRCC 2 cut(s) 43, 568
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 2 cut(s) 416, 675
BsrI ACTGG 2 cut(s) 70, 1023
BssECI CCNNGG 2 cut(s) 405, 442
BssMI GATC 2 cut(s) 694, 709
BssNI GRCGYC 2 cut(s) 282, 1209
Bst2UI CCWGG 2 cut(s) 54, 916
Bst4CI ACNGT 4 cut(s) 298, 338, 430, 1302
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 2 cut(s) 282, 1209
BstAFI CTTAAG 1 cut(s) 670
BstBI TTCGAA 1 cut(s) 1100
BstC8I GCNNGC 1 cut(s) 1333
BstDEI CTNAG 5 cut(s) 263, 303, 378, 767, 1308
BstDSI CCRYGG 2 cut(s) 405, 442
BstF5I GGATG 3 cut(s) 391, 1084, 1190
BstFNI CGCG 3 cut(s) 407, 444, 750
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 2 cut(s) 697, 712
BstMAI GTCTC 1 cut(s) 838
BstMBI GATC 2 cut(s) 694, 709
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 5 cut(s) 413, 611, 1034, 1319, 1328
BstNI CCWGG 2 cut(s) 54, 916
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 5 cut(s) 52, 600, 605, 914, 920
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 3 cut(s) 407, 444, 750
BstV1I GCAGC 2 cut(s) 362, 660
BstV2I GAAGAC 2 cut(s) 723, 893
BstZI CGGCCG 1 cut(s) 603
BsuRI GGCC 6 cut(s) 238, 605, 704, 866, 1195, 1335
BtgI CCRYGG 2 cut(s) 405, 442
BtgZI GCGATG 2 cut(s) 425, 789
BtsCI GGATG 3 cut(s) 391, 1084, 1190
BtsIMutI CAGTG 2 cut(s) 21, 426
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 1 cut(s) 1333
CaiI CAGNNNCTG 2 cut(s) 553, 1049
CfoI GCGC 1 cut(s) 752
Cfr13I GGNCC 7 cut(s) 237, 498, 598, 654, 703, 918, 928
Cfr42I CCGCGG 2 cut(s) 408, 445
CpoI CGGWCCG 1 cut(s) 654
CseI GACGC 1 cut(s) 290
CsiI ACCWGGT 1 cut(s) 52
Csp6I GTAC 2 cut(s) 164, 569
CspI CGGWCCG 1 cut(s) 654
CviAII CATG 4 cut(s) 466, 516, 776, 846
CviQI GTAC 2 cut(s) 164, 569
DdeI CTNAG 5 cut(s) 263, 303, 378, 767, 1308
DpnI GATC 2 cut(s) 696, 711
DpnII GATC 2 cut(s) 694, 709
DrdI GACNNNNNNGTC 1 cut(s) 587
DriI GACNNNNNGTC 1 cut(s) 916
DseDI GACNNNNNNGTC 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 603
EagI CGGCCG 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 154
Eam1105I GACNNNNNGTC 1 cut(s) 916
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 923
EclXI CGGCCG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 1195
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 5 cut(s) 498, 598, 654, 918, 928
Eco52I CGGCCG 1 cut(s) 603
EcoO109I RGGNCCY 3 cut(s) 598, 703, 918
EcoRII CCWGG 2 cut(s) 52, 914
EcoT38I GRGCYC 1 cut(s) 523
FaeI CATG 4 cut(s) 469, 519, 779, 849
FaqI GGGAC 1 cut(s) 904
FatI CATG 4 cut(s) 465, 515, 775, 845
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 351, 408, 649
FokI GGATG 3 cut(s) 398, 1091, 1197
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 3 cut(s) 351, 408, 649
FspBI CTAG 2 cut(s) 830, 1337
GlaI GCGC 1 cut(s) 751
GluI GCNGC 3 cut(s) 351, 408, 649
GsuI CTGGAG 2 cut(s) 610, 898
HaeIII GGCC 6 cut(s) 238, 605, 704, 866, 1195, 1335
HapII CCGG 5 cut(s) 222, 602, 606, 652, 922
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 752
Hin1I GRCGYC 2 cut(s) 282, 1209
Hin1II CATG 4 cut(s) 469, 519, 779, 849
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HincII GTYRAC 2 cut(s) 819, 1207
HindII GTYRAC 2 cut(s) 819, 1207
HindIII AAGCTT 2 cut(s) 667, 1057
HinfI GANTC 8 cut(s) 158, 245, 305, 447, 719, 724, 800, 911
HpaII CCGG 5 cut(s) 222, 602, 606, 652, 922
HphI GGTGA 5 cut(s) 51, 286, 290, 871, 1019
Hpy166II GTNNAC 4 cut(s) 59, 744, 819, 1207
Hpy188I TCNGA 4 cut(s) 310, 458, 799, 1249
Hpy188III TCNNGA 2 cut(s) 713, 1109
Hpy8I GTNNAC 4 cut(s) 59, 744, 819, 1207
HpyAV CCTTC 5 cut(s) 567, 579, 583, 856, 1185
HpyCH4III ACNGT 4 cut(s) 298, 338, 430, 1302
HpyCH4IV ACGT 3 cut(s) 270, 947, 1209
HpyF10VI GCNNNNNNNGC 5 cut(s) 413, 611, 1034, 1319, 1328
HpyF3I CTNAG 5 cut(s) 263, 303, 378, 767, 1308
HpySE526I ACGT 3 cut(s) 270, 947, 1209
Hsp92I GRCGYC 2 cut(s) 282, 1209
Hsp92II CATG 4 cut(s) 469, 519, 779, 849
HspAI GCGC 1 cut(s) 750
KpnI GGTACC 1 cut(s) 572
KspI CCGCGG 2 cut(s) 408, 445
Kzo9I GATC 2 cut(s) 694, 709
LmnI GCTCC 3 cut(s) 111, 813, 1232
Lsp1109I GCAGC 2 cut(s) 362, 660
LweI GCATC 1 cut(s) 1309
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 2 cut(s) 830, 1337
MaeII ACGT 3 cut(s) 270, 947, 1209
MaeIII GTNAC 6 cut(s) 72, 278, 388, 778, 956, 1149
MalI GATC 2 cut(s) 696, 711
MboI GATC 2 cut(s) 694, 709
MboII GAAGA 9 cut(s) 31, 82, 141, 551, 728, 881, 898, 1022, 1306
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 4 cut(s) 7, 1038, 1090, 1103
MlyI GAGTC 4 cut(s) 239, 314, 713, 905
MmeI TCCRAC 5 cut(s) 226, 363, 906, 1246, 1261
MseI TTAA 2 cut(s) 333, 671
MspA1I CMGCKG 2 cut(s) 407, 444
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 5 cut(s) 222, 602, 606, 652, 922
MspR9I CCNGG 5 cut(s) 54, 602, 607, 916, 922
MvaI CCWGG 2 cut(s) 54, 916
MvnI CGCG 3 cut(s) 407, 444, 750
MwoI GCNNNNNNNGC 5 cut(s) 413, 611, 1034, 1319, 1328
NciI CCSGG 3 cut(s) 602, 607, 922
NdeII GATC 2 cut(s) 694, 709
NlaIII CATG 4 cut(s) 469, 519, 779, 849
NlaIV GGNNCC 9 cut(s) 45, 107, 239, 570, 600, 705, 920, 930, 1234
NmuCI GTSAC 5 cut(s) 72, 278, 388, 778, 1149
NspI RCATGY 1 cut(s) 779
NspV TTCGAA 1 cut(s) 1100
PceI AGGCCT 1 cut(s) 1195
PfeI GAWTC 4 cut(s) 158, 447, 724, 800
PkrI GCNGC 3 cut(s) 352, 409, 650
PleI GAGTC 4 cut(s) 239, 313, 713, 905
PpsI GAGTC 4 cut(s) 239, 313, 713, 905
PpuMI RGGWCCY 2 cut(s) 598, 918
Psp5II RGGWCCY 2 cut(s) 598, 918
Psp6I CCWGG 2 cut(s) 52, 914
PspGI CCWGG 2 cut(s) 52, 914
PspN4I GGNNCC 9 cut(s) 45, 107, 239, 570, 600, 705, 920, 930, 1234
PspPI GGNCC 7 cut(s) 237, 498, 598, 654, 703, 918, 928
PspPPI RGGWCCY 2 cut(s) 598, 918
PstI CTGCAG 1 cut(s) 38
PstNI CAGNNNCTG 2 cut(s) 553, 1049
RsaI GTAC 2 cut(s) 165, 570
RsaNI GTAC 2 cut(s) 164, 569
Rsr2I CGGWCCG 1 cut(s) 654
RsrII CGGWCCG 1 cut(s) 654
SacII CCGCGG 2 cut(s) 408, 445
SaqAI TTAA 2 cut(s) 333, 671
SatI GCNGC 3 cut(s) 351, 408, 649
Sau3AI GATC 2 cut(s) 694, 709
Sau96I GGNCC 7 cut(s) 237, 498, 598, 654, 703, 918, 928
SchI GAGTC 4 cut(s) 239, 314, 713, 905
ScrFI CCNGG 5 cut(s) 54, 602, 607, 916, 922
SduI GDGCHC 1 cut(s) 523
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 1 cut(s) 1309
SfcI CTRYAG 1 cut(s) 34
Sfr303I CCGCGG 2 cut(s) 408, 445
SfuI TTCGAA 1 cut(s) 1100
SgrBI CCGCGG 2 cut(s) 408, 445
SinI GGWCC 5 cut(s) 498, 598, 654, 918, 928
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 4 cut(s) 7, 1038, 1090, 1103
SseBI AGGCCT 1 cut(s) 1195
SsiI CCGC 6 cut(s) 405, 407, 442, 444, 908, 986
SspMI CTAG 2 cut(s) 830, 1337
StuI AGGCCT 1 cut(s) 1195
StyD4I CCNGG 5 cut(s) 52, 600, 605, 914, 920
TaaI ACNGT 4 cut(s) 298, 338, 430, 1302
TaiI ACGT 3 cut(s) 273, 950, 1212
TaqI TCGA 6 cut(s) 93, 321, 722, 738, 1100, 1139
TaqII GACCGA 1 cut(s) 671
TasI AATT 4 cut(s) 7, 1038, 1090, 1103
TatI WGTACW 1 cut(s) 163
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 4 cut(s) 158, 447, 724, 800
Tru1I TTAA 2 cut(s) 333, 671
Tru9I TTAA 2 cut(s) 333, 671
TscAI CASTG 2 cut(s) 21, 433
TseFI GTSAC 5 cut(s) 72, 278, 388, 778, 1149
TseI GCWGC 2 cut(s) 350, 648
Tsp45I GTSAC 5 cut(s) 72, 278, 388, 778, 1149
TspDTI ATGAA 2 cut(s) 552, 792
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 21, 433
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 5 cut(s) 498, 598, 654, 918, 928
XapI RAATTY 2 cut(s) 7, 1103
XceI RCATGY 1 cut(s) 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 2 cut(s) 830, 1337
ZraI GACGTC 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.