Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000866

Physical Location & Seq

Genomic Coordinates Forward (+)

14240837 .. 14241682

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G225700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCATCTTCGAAAACTTTTCTTCTTCTTGGTCTTGTCTTTGCTGTTGTCCTCGTCTCCTCTGAGGTCGTCTCAGCTCGCGAGCTGGTTCCGACTACTGCTCAAACCCAGGAAAATGTAGAGAAGGATAACTATGGTGACCATTTTCACTGCCACGAGCATGGACTTTGGGAGCATGGCCACGGCCATTGCCACGGACACTGGGAGCATTGTGGCCATGGCTGCCACGGAAAATGGGGACATGGTGCTGCTGGGAGTGAAATAGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

91

Amino Acids

9.87

Weight (kDa)

5.94

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000866)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23680 FvH4_6g21640 FvH4_6g21640 FvH4_6g21650 FvH4_6g21660 FvH4_6g21660 FvH4_6g21670
malus_domestica	MD03G1191700.v1.1 MD03G1191900.v1.1 MD03G1192000.v1.1
prunus_persica	Prupe.4G225300_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225500_v2.0.a1 Prupe.4G225600_v2.0.a1 Prupe.4G225700_v2.0.a1 Prupe.4G225800_v2.0.a1 Prupe.4G226000_v2.0.a1 Prupe.4G226100_v2.0.a1 Prupe.4G226200_v2.0.a1 Prupe.4G227100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0339861 RchiOBHm_Chr1g0339881 RchiOBHm_Chr3g0478901 RchiOBHm_Chr5g0041801 RchiOBHm_Chr5g0041811
rosa_laevigata	RLG00000029243 RLG00000034095
rosa_multiflora	Rmu_co7998732.1_g000001 Rmu_co8433149.1_g000001 Rmu_sc0000861.1_g000038 Rmu_sc0003498.1_g000013 Rmu_sc0005255.1_g000010
rosa_roxburghii	Rroxscaffold_1G00038720 Rroxscaffold_1G00038730 Rroxscaffold_4G00313770 Rroxscaffold_4G00313780 Rroxscaffold_4G00315370 Rroxscaffold_4G00315380 Rroxscaffold_6G00402890
rosa_rugosa	Rorug01G0124600 Rorug01G0124700 Rorug01G0138700.1 Rorug01G0139000.1 Rorug01G0139200.1 Rorug01G0139300.1 Rorug03G0169100 Rorug03G0169200 Rorug03G0169200 Rorug05G0195300 Rorug05G0195400
rosa_samantha	Rh1AG157200 Rh1CG146900 Rh3AG220700 Rh3BG252600 Rh3CG249400 Rh5AG280600 Rh5AG280700 Rh5BG286600 Rh5DG295300
rosa_wichuraiana	Rw1G012890 Rw1G012900 Rw1G012910 Rw1G012920 Rw1G012950 Rw1G012970 Rw3G019850 Rw5G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AcoI	YGGCCR	3 cut(s)	178, 184, 214
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	77, 85
AluI	AGCT	2 cut(s)	77, 85
Alw26I	GTCTC	2 cut(s)	61, 76
AoxI	GGCC	3 cut(s)	178, 184, 214
ApeKI	GCWGC	2 cut(s)	222, 248
AsuHPI	GGTGA	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	11
BalI	TGGCCA	2 cut(s)	180, 216
BauI	CACGAG	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	209, 235
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	61, 76
BisI	GCNGC	2 cut(s)	223, 249
BlsI	GCNGC	2 cut(s)	224, 250
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu14I	TTCGAA	1 cut(s)	11
BsaJI	CCNNGG	5 cut(s)	108, 181, 193, 217, 226
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	5 cut(s)	108, 181, 193, 217, 226
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	54, 87
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	209, 235
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	180, 186, 216
BslFI	GGGAC	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	61, 76
BsmBI	CGTCTC	2 cut(s)	61, 76
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	180, 186, 216
Bsp119I	TTCGAA	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	217
Bsp68I	TCGCGA	1 cut(s)	81
BspANI	GGCC	3 cut(s)	180, 186, 216
BspCNI	CTCAG	2 cut(s)	55, 86
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	108, 181, 193, 217, 226
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	2 cut(s)	63, 73
BstDSI	CCRYGG	4 cut(s)	181, 193, 217, 226
BstEII	GGTNACC	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	61, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	209, 235
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	180, 186, 216
BtgI	CCRYGG	4 cut(s)	181, 193, 217, 226
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 199
BtuMI	TCGCGA	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	79, 83
CspCI	CAANNNNNGTGG	2 cut(s)	170, 205
CviAII	CATG	4 cut(s)	161, 176, 218, 242
CviJI	RGCY	6 cut(s)	77, 85, 180, 186, 216, 222
CviKI_1	RGCY	6 cut(s)	77, 85, 180, 186, 216, 222
DdeI	CTNAG	2 cut(s)	63, 73
EaeI	YGGCCR	3 cut(s)	178, 184, 214
Eco130I	CCWWGG	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	2 cut(s)	61, 76
FaeI	CATG	4 cut(s)	164, 179, 221, 245
FaiI	YATR	5 cut(s)	135, 162, 177, 219, 243
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	4 cut(s)	160, 175, 217, 241
Fnu4HI	GCNGC	2 cut(s)	223, 249
Fsp4HI	GCNGC	2 cut(s)	223, 249
GluI	GCNGC	2 cut(s)	223, 249
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	180, 186, 216
Hin1II	CATG	4 cut(s)	164, 179, 221, 245
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	64, 93
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	63, 73
Hsp92II	CATG	4 cut(s)	164, 179, 221, 245
LmnI	GCTCC	2 cut(s)	172, 205
LpnPI	CCDG	5 cut(s)	71, 95, 122, 187, 237
Lsp1109I	GCAGC	2 cut(s)	209, 235
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	14, 17
MlsI	TGGCCA	2 cut(s)	180, 216
MluCI	AATT	1 cut(s)	268
MluNI	TGGCCA	2 cut(s)	180, 216
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	58, 62, 70
Mox20I	TGGCCA	2 cut(s)	180, 216
MscI	TGGCCA	2 cut(s)	180, 216
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	2 cut(s)	180, 216
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	217
NlaIII	CATG	4 cut(s)	164, 179, 221, 245
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	137
NruI	TCGCGA	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	224, 250
Psp6I	CCWGG	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	90
RruI	TCGCGA	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	159
SatI	GCNGC	2 cut(s)	223, 249
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	3 cut(s)	69, 79, 87
SfaNI	GCATC	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	217
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	268
TscAI	CASTG	2 cut(s)	155, 206
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	222, 248
Tsp45I	GTSAC	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	210, 243
TspRI	CASTG	2 cut(s)	155, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.